View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4037_low_9 (Length: 256)
Name: NF4037_low_9
Description: NF4037
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4037_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 11 - 256
Target Start/End: Original strand, 8828409 - 8828653
Alignment:
| Q |
11 |
cacagattctattcctaccattgatcttcaaggccttgatgcatcaaatcgttctgaaatcatccaaaagattgcacatgcatgtcgaaattatggnnnn |
110 |
Q |
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| T |
8828409 |
cacagattctattcctaccattgatcttcaaggccttgatgcatcaaatcgttctgaaatcatccaaaagattgcacatgcatgtcgaaattatggtttt |
8828508 |
T |
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| Q |
111 |
nnncaagtatattcatcatcaaatcaaaaacttgtttannnnnnnnagctctaaatagcctagcacgaaaatcatacgcatagttcttgaaagtggaaaa |
210 |
Q |
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| T |
8828509 |
tttcaagtatattcatcatcaaatcaaaaacttgtttattttttttagctctaaatagcctagcacgaaaatcatacgcatagttcttgaaagtggaaaa |
8828608 |
T |
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| Q |
211 |
ttgagagtttgaaactcaacactaacatatgaaatgtttacaactt |
256 |
Q |
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| T |
8828609 |
ttgcgagtttgaaactcaac-ctaacatatgaaatgtttacaactt |
8828653 |
T |
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