View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_13 (Length: 410)
Name: NF4038_high_13
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 392
Target Start/End: Complemental strand, 7665924 - 7665544
Alignment:
| Q |
12 |
agagaattgaatgctttgggaaaagatggttttgatgctgagatgaaaaagcttggaaggttaaaacattggaatgttttgacacctttagcttatcatt |
111 |
Q |
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| T |
7665924 |
agagaattgaatgctttgggaaaagatggttttgatgctgagatgaaaaagcttggaaggttaaaacattggaatgttttgacacctttagcttatcatt |
7665825 |
T |
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| Q |
112 |
acagaaaagatgagaaattagttatctctgagtatgttcctagaggaagtctactctatttgctgcatggtaaaattttcataattaccatcaattaagt |
211 |
Q |
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| T |
7665824 |
acagaaaagatgagaaattagttatctctgagtatgttcctagaggaagtctactctacttgctgcatggtaaaattttcataattaccatcaattaagt |
7665725 |
T |
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| Q |
212 |
tattataagcacttaattaagttgttatagtatcttatgttatagtgtactaattgcaggtgatagaggaccatcacatgcagaactagattggaacaca |
311 |
Q |
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| T |
7665724 |
tgttataagcacttaattaagttgttatagtatcttatgttatagtgtactaattgcaggtgatagaggaccatcacatgcagaactagattggaacaca |
7665625 |
T |
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| Q |
312 |
cgtttaaagatagtacaaggaattgcaaaaggaatgcattatcttcacacagaatattcttcatctgatctaccacatgga |
392 |
Q |
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| T |
7665624 |
cgtttaaagatagtacaaggaattgcaaaaggaatgcattatcttcacacagaatatccttcatctgatctaccacatgga |
7665544 |
T |
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