View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_17 (Length: 380)
Name: NF4038_high_17
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 376
Target Start/End: Complemental strand, 35723810 - 35723434
Alignment:
| Q |
1 |
ttgttttctgcctttcctcattctcataccatttagcctttttccctattag-aaaaaatcacttgaaatcaattacataagaaaaatatgaaaacatct |
99 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
35723810 |
ttgttttccgcctttcctcattctcataccatttagcctttttccctattaggaaaaaatcacttgaaatcagttacataataaaaatatgaaaacatct |
35723711 |
T |
|
| Q |
100 |
cggtcaacatgtcacattatcaaatttcaatgtcataagatctaaatannnnnnnaacatgaaattaaatcgggtttaaagggaagtgtacaagaaaaaa |
199 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35723710 |
cagtcaacatgtcacattatcaaatttcaatgtcataagatctaaacatttttttaacatgaaattaaattgggtttaaagggaagtgtacaagaaaaaa |
35723611 |
T |
|
| Q |
200 |
taagggtgcaaaaagcaagctaactcccacaaaaaagcaacctagggtttaagtactatcctaaccactaaacccaacccaccggttcggtggcaaactt |
299 |
Q |
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|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35723610 |
taagggtgcaaaaagcaagccaactcccacaaaaaagcaacctagggtttaagtactatcctaaccactaaacccaacccaccggttcggtggcaaactc |
35723511 |
T |
|
| Q |
300 |
aaaattaacaaaaaataaagagcgggatttgaaccctcgtttcacaacacactccatttcatatcttcatctcactc |
376 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35723510 |
aaaattaacaaaaaataaagagcgggatttgaaccctcgtttcacaacacactccatttcatatcttcatttcactc |
35723434 |
T |
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