View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_18 (Length: 375)
Name: NF4038_high_18
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 9e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 81 - 271
Target Start/End: Original strand, 533351 - 533533
Alignment:
| Q |
81 |
aaaacagacgtcagaaacaaattaagtaaatttttgtagttagnnnnnnnaattttatcctcgtttgaatttaccaaatagattcctttttatcttttnn |
180 |
Q |
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| T |
533351 |
aaaacagacgtcagaaacaaattaagtaaatttttgtagttagtttttttaattttatcctcgtttgaatttaccaaatagattcctttttatctttt-- |
533448 |
T |
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| Q |
181 |
nnnnnnnnnnnntcgcatgacaaacaacttaataacctatatatactgttgctctctccaataaataaaaattatggttttacttatagta |
271 |
Q |
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| T |
533449 |
----acacacactcgcataacaaacaacttaataacctatatatactgttgctctctccaataaacaaaaattatgg--ttacttatagta |
533533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 533271 - 533309
Alignment:
| Q |
1 |
tccaaagtttcctagaaaaaggaaaaagaatctatatgc |
39 |
Q |
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| T |
533271 |
tccaaagtttcctagaaaaaggaaaaagaatctatatgc |
533309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 347
Target Start/End: Original strand, 533532 - 533568
Alignment:
| Q |
311 |
taccctctttttagccgatgttttgactgagtaatgt |
347 |
Q |
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| T |
533532 |
taccctctttttagctgatgttttgactgagtaatgt |
533568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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