View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_28 (Length: 289)
Name: NF4038_high_28
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_28 |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 31078095 - 31077932
Alignment:
| Q |
18 |
cacatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactaca |
117 |
Q |
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| T |
31078095 |
cacatgactatgcttagagagtagccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactaca |
31077996 |
T |
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| Q |
118 |
aatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttg |
181 |
Q |
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| T |
31077995 |
aatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaaagttg |
31077932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 31127413 - 31127255
Alignment:
| Q |
18 |
cacatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
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| T |
31127413 |
cacatgactatgcttagagagtaaccaaaagaaccaagtgagtgcagctgaagttgtatctctcccagcaagaataaagcttattacaatatcaacaaca |
31127314 |
T |
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| Q |
118 |
aatgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaa |
176 |
Q |
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| T |
31127313 |
aaagattcatctgaatgacctgaacttaaaaatcgtgatagaatatccaatgattccaa |
31127255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 31132120 - 31131963
Alignment:
| Q |
19 |
acatgactatgcttagagagtaaccaaaagaaccacgtgagtgcagctgaagttgtatctttcccagcaagaataaagcttattacaatatcaactacaa |
118 |
Q |
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| T |
31132120 |
acatgactatgcttagagattaacaaaaagaaccacgtgagtgcagctgaagttgtatctctcccagcaagaataaagcttatcacaatatcaactacaa |
31132021 |
T |
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| Q |
119 |
atgattcatccgaatgacccgaacttaaaaaccgcgataaaagatcaactgattccaa |
176 |
Q |
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| T |
31132020 |
aagattcgtccgaatgaccagaacttaaaaatcgcgacaaaatatccaccgattccaa |
31131963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 31077904 - 31077834
Alignment:
| Q |
209 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatccctatg |
279 |
Q |
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| T |
31077904 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcgatccctatg |
31077834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 31128902 - 31128854
Alignment:
| Q |
209 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttcttt |
257 |
Q |
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| T |
31128902 |
ccctaacgattcttgtggcgagtcctcttacttcaacgacggcttcttt |
31128854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 269
Target Start/End: Complemental strand, 31127222 - 31127162
Alignment:
| Q |
209 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctc |
269 |
Q |
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| T |
31127222 |
ccctaacgattcttgtggcgagtcctcttacttcagcagcagcttcttttaaccgtcgctc |
31127162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 270
Target Start/End: Complemental strand, 31131930 - 31131869
Alignment:
| Q |
209 |
ccctaacgattcttgtagcaagtcctcttacttcagcgacggcttctttcaatcgtcgctcg |
270 |
Q |
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| T |
31131930 |
ccctaacaatttttgtggcgagcccccttacttcagcgacagcttctttcaaccgtcgctcg |
31131869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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