View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_34 (Length: 260)
Name: NF4038_high_34
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_34 |
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Alignment Details
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 155 - 242
Target Start/End: Complemental strand, 8097929 - 8097842
Alignment:
| Q |
155 |
ataatttattttgatcctattaaccaacaatatttgatcataatatatacaattaaacacaatagaaaagcatacagatagacgacac |
242 |
Q |
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| T |
8097929 |
ataatttattttgatcctattaaccaacaatatttgatcataatatatacaattaaacacagtagaaaagcatacagatagacgacac |
8097842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 8098133 - 8098058
Alignment:
| Q |
1 |
aatataataggcgatgaggtctttagtcttaagtcaattctttgttttatggcaatcggccatcgagtgagcacgg |
76 |
Q |
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| T |
8098133 |
aatataataggcgatgaggtcttttgtattaagtcaattctttgttttatggcaatcggccatcgaatgagcacgg |
8098058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 8097974 - 8097928
Alignment:
| Q |
84 |
cctttttatattatttaaatcattaattatttggatttcattgaaat |
130 |
Q |
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| T |
8097974 |
cctttttatattatttaaatcattaattatttagatttcattgaaat |
8097928 |
T |
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