View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_35 (Length: 254)
Name: NF4038_high_35
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_35 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 26690558 - 26690319
Alignment:
| Q |
9 |
agcagagaatccggatccgtctcagtactgcagtatatctgcagaagccataataggcataggctggttcatataagacatattattcaaagagttgaag |
108 |
Q |
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| T |
26690558 |
agcagggaatccggatccgtctcagtactgcagtatatctgcagaagccataataggc------tggttcatataagacatattattcaaagagttgaag |
26690465 |
T |
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| Q |
109 |
aagaaaccattattttgctcaacaaaagcatttgatgctccaaaaactccattgcttgaattcaaggcaccaacaatttcattcaaagattccaacctgt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26690464 |
aagaaaccattattttgctcaacaaaagcatttgatgctccaaaaactccattgcttgaattcaaggcaccaacaatttcattcaaagattccaacctgt |
26690365 |
T |
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| Q |
209 |
tgcttaattctcccatctgagccctcaacactgaattttcagcttc |
254 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
26690364 |
tgctcaattcacccatctgagccctcaacactgaattttcagcttc |
26690319 |
T |
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