View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_36 (Length: 252)
Name: NF4038_high_36
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 41043994 - 41044227
Alignment:
| Q |
1 |
aatgatgggtatcttccaattgccaaaatgtttgcaaaccatgacgttgtcttcaatttcacctgcatggaaatgaaagacagagaacaacctggacatg |
100 |
Q |
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| T |
41043994 |
aatgatgggtatcttccaattgccaaaatgtttgcaaaccatgacgttgtcttcaatttcacctgcatggaaatgaaagacagagaacaacctggacatg |
41044093 |
T |
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| Q |
101 |
ctaactgttcgccagaagggttagttcaccaagtcaagaaggcaacaaaaatggctaatatagaacttgctggggaaaatgcactggagagatatgattc |
200 |
Q |
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| T |
41044094 |
ctaactgttcgccagaagggttagttcaccaagtcaagaaggcaacaaaaatggctaatatagaacttgctggggaaaatgcactggagagatatgattc |
41044193 |
T |
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| Q |
201 |
aggtggatatgctcaagttttgtcaacaagtatg |
234 |
Q |
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| T |
41044194 |
aggtggatatgctcaagttttgtcaacaagtatg |
41044227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 231
Target Start/End: Complemental strand, 4370808 - 4370632
Alignment:
| Q |
55 |
aatttcacctgcatggaaatgaaagacagagaacaacctggacatgctaactgttcgccagaagggttagttcaccaagtcaagaaggcaacaaaaatgg |
154 |
Q |
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| T |
4370808 |
aatttcacatgcatggaaatgaaggataatgaacaacctggccatgctaattgttcaccagaaggattggtgaatcaagtgaagatggcaacaaagattg |
4370709 |
T |
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| Q |
155 |
ctaatatagaacttgctggggaaaatgcactggagagatatgattcaggtggatatgctcaagttttgtcaacaagt |
231 |
Q |
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| T |
4370708 |
caggtggtgaacttgctggtgagaatgcattggagagatatgattcaagtgcttatggtcaagttttgtctacaagt |
4370632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 163 - 231
Target Start/End: Complemental strand, 4362897 - 4362829
Alignment:
| Q |
163 |
gaacttgctggggaaaatgcactggagagatatgattcaggtggatatgctcaagttttgtcaacaagt |
231 |
Q |
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||||||||||| || ||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| |
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| T |
4362897 |
gaacttgctggtgagaatgctttggagagatatgattcaagtgcttatggtcaagttttgtcaacaagt |
4362829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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