View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_40 (Length: 250)
Name: NF4038_high_40
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 25714132 - 25714374
Alignment:
| Q |
1 |
tagttctgtttattagaactgaatagtaa----taatattgttattatttgtttgatatgaagttgtaatagtagtatacatttttgaaagagtaatagt |
96 |
Q |
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| T |
25714132 |
tagttctgtttattagaactgaatagtaagtaataatattgttattatttgtt-gatatgaagttgtaatagtagtatacatttttgaaagagtaatagt |
25714230 |
T |
|
| Q |
97 |
agtatacatataaaaataattatacaagtgtaccacttttttatgttttggttttatctggggttattcagtcttgcttcaaaccatcacctcatgaaat |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| |
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| T |
25714231 |
agtatacatataaaaataattatacaagtgtaccacttttttatgttttggttttatctggggttgttcagtcttggctcaaaccatcaccttatgaaat |
25714330 |
T |
|
| Q |
197 |
gcatattgtatattaactaattagatgtataaactcttcctatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25714331 |
gcatattgtatattaactaattagatgtataaactcttcctatg |
25714374 |
T |
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