View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_42 (Length: 248)
Name: NF4038_high_42
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_42 |
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Alignment Details
Target: chr6 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 79 - 232
Target Start/End: Original strand, 30936229 - 30936385
Alignment:
| Q |
79 |
tcatatttgttaggctaaccacaaattcaagaagtactata----gtaagtaagagtttcatacatgtttatagtgatagtaagtttcatacatgcaaat |
174 |
Q |
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| T |
30936229 |
tcatacttgttaggccaaccacaaattcaagaagtactatatatagtaagtaagagcttcatgcatgttcatagggatagtaagtttcatacatg-aaat |
30936327 |
T |
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| Q |
175 |
taagcaaccaagtaacaaaaagtggtgacagaaaatctcactcaccttgggaaccaag |
232 |
Q |
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| T |
30936328 |
taagcaaccaagtaacaaaaagtggagacagaaagtctcactaaccttgggaaccaag |
30936385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 30966460 - 30966529
Alignment:
| Q |
163 |
atacatgcaaattaagcaaccaagtaacaaaaagtggtgacagaaaatctcactcaccttgggaaccaag |
232 |
Q |
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| T |
30966460 |
atacatgcaaattaagcaaccaactaacaaaaagtggtgacagaaagtctcgctcaccttgggaaccaag |
30966529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 30957466 - 30957560
Alignment:
| Q |
86 |
tgttaggctaaccacaaattcaagaagtactatagtaagtaagagtttcatacatgtttatagtgatagtaagtttcatacatgcaaattaagcaaccaa |
185 |
Q |
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| T |
30957466 |
tgttaggctaaccacaaattcaagaagtac--cagt-agtaagagtttc--acatgttcatagtgatagtaagtttcacacattcaaattaagcaaccaa |
30957560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 57
Target Start/End: Original strand, 30957296 - 30957352
Alignment:
| Q |
3 |
ctttctgtatttatgtgtatattattggaaataat--tatgaatgactagtcatgat |
57 |
Q |
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| T |
30957296 |
ctttttgtattaatgtgtatattattcgaaataattatatgaatgattagtcatgat |
30957352 |
T |
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