View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_46 (Length: 239)
Name: NF4038_high_46
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_46 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4385466 - 4385237
Alignment:
| Q |
1 |
ctaaactaatcaacaacataatgaagtagataacccttttgtattaaaccaaacaccaaagtcaaaagtgtacacttgttggttccaataatacatatgc |
100 |
Q |
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| T |
4385466 |
ctaaactaatcaataacataatgaagtagataacccttttgtattaaaccaaacaccaaagtcaaaagtgtacacttgttggttccaataatacatatgc |
4385367 |
T |
|
| Q |
101 |
acaatctcttaaaattgtgtgatgaaaatcaaaa---------tccatttattaaatatgctggaacaaattctcccttttactcaatcaaaaaacaatt |
191 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4385366 |
acaatctcttaaaattgtgtgatgaaaatcaaaatgtacatactccatttattaaatatgctggaacaaattctcccttttgctcaatcaaaaaacaatt |
4385267 |
T |
|
| Q |
192 |
tatggtggtaatcacttattaaataacctt |
221 |
Q |
| |
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|||||| ||| ||||||||||||||||||| |
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| T |
4385266 |
tatggtagtattcacttattaaataacctt |
4385237 |
T |
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