View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_48 (Length: 236)
Name: NF4038_high_48
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_48 |
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Alignment Details
Target: chr5 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 16572606 - 16572507
Alignment:
| Q |
1 |
tacatcagcaaagtcattatcatctcacattcttaccttccattccactgctaaatggaaggcttactttgatgcctccaaagaaactaacaagctggtg |
100 |
Q |
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| T |
16572606 |
tacatcagcaaagtcattatcatctcacattcttaccttccattccactgctaaatggaaggcttactttgatgcctccaaagaaactaacaagctggtg |
16572507 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 16572444 - 16572385
Alignment:
| Q |
163 |
gctctcatgagatcttgtatttttt--gccttagatggtaattgaatttacggctgcatg |
220 |
Q |
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| T |
16572444 |
gctctcatgagatcttgtatttttttggctttagatggttattgaatttacggctgcatg |
16572385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 32 - 99
Target Start/End: Complemental strand, 16578837 - 16578770
Alignment:
| Q |
32 |
cttaccttccattccactgctaaatggaaggcttactttgatgcctccaaagaaactaacaagctggt |
99 |
Q |
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| T |
16578837 |
cttaccttccactcaactgctaaatggaaggctcactttgaggcttccaaagtaacaaacaagctggt |
16578770 |
T |
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