View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_5 (Length: 572)
Name: NF4038_high_5
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 66 - 529
Target Start/End: Complemental strand, 12583391 - 12582928
Alignment:
| Q |
66 |
acccccgtgagatatttatccttctctaatgataagttgattcacagagaaaaccactccctgattcgaaagaatatttcctccaatttgcctacgccat |
165 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12583391 |
acccccgtgagatatttatcctcctctaatgataagttgattcacagagaaaaccgctccctgattcgaaagaatatttcctccaatttgcctacaccat |
12583292 |
T |
|
| Q |
166 |
tgacgatagtttctttctttaccatcattctcggtctcactcccaacctgttgccccttcatatcgttatgttgcctcctctgagtttcagcagcacagt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12583291 |
tgacgatagtttctttctttaccatcattctcggtctcactcccaacctgttgccccttcatatcgttatgttgcctcctctgagtttcagcagcacagt |
12583192 |
T |
|
| Q |
266 |
gagaacatgtcctccacttccaagttcatgttctagaaacttgttgaaacatttgaagcaatgcaaaagaaggatgttataagacccttcactctaatag |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12583191 |
gagaacatgtcctccacttccaagttcatgttctagaaacttgttgaaacatttgaagcaatgcaaaagaaggatgttataagacccttcactctaatag |
12583092 |
T |
|
| Q |
366 |
ctaccactattgatagcccaacatcatattgttttttacgaattaaagtgtgtttactaacagcataatagtgtgtaccacggtcactgcccaatgcttt |
465 |
Q |
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| T |
12583091 |
ctaccactattgatagcccaacatcatattgttttttacgaattaaagtgtgtttactaacagcataatagtgtgtaccacggtcactgcccaatgcttt |
12582992 |
T |
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| Q |
466 |
tcannnnnnngtttctcttatgctccactacaacaaggttccactcatattcactcctgtggtg |
529 |
Q |
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| T |
12582991 |
tcacccccccgtttctcttatgctccactacaactaggttccgctcatattcactcccgtggtg |
12582928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 343
Target Start/End: Complemental strand, 33246050 - 33245954
Alignment:
| Q |
247 |
tgagtttcagcagcacagtgagaacatgtcctccacttccaagttcatgttctagaaacttgttgaaacatttgaagcaatgcaaaagaaggatgtt |
343 |
Q |
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||||||| ||||||||| ||||| |||| | ||||||||||| | ||||||||||| ||||||| |||||||||||| ||| | |||||||| |||| |
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| T |
33246050 |
tgagtttgagcagcacaatgagaccatgccgtccacttccaaatccatgttctagatacttgttcaaacatttgaaggaataccaaagaagggtgtt |
33245954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 33226447 - 33226496
Alignment:
| Q |
278 |
tccacttccaagttcatgttctagaaacttgttgaaacatttgaagcaat |
327 |
Q |
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||||||||||| | | |||| |||| |||||||||||||||||||||||| |
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| T |
33226447 |
tccacttccaaatccttgttgtagatacttgttgaaacatttgaagcaat |
33226496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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