View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4038_high_53 (Length: 230)
Name: NF4038_high_53
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_53 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 16790931 - 16790733
Alignment:
| Q |
18 |
agaaggaacatatgatctactaattattattaacc-acatacaacactcattaaaaatatcagagtctactaatagatcaaaaatgctgaaaaaatctag |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
16790931 |
agaaggaacatatgatctactaattattattaacccacatacaacactcattaaaaatatcagggtctactaatagatcaaaaatgctgaaaaaatctag |
16790832 |
T |
|
| Q |
117 |
gattaaaaccgtctaggacaggatatttattcgggtgcatagaaaacatattcttgaggttgaaagggggttgttaaaagagcattatcatcctctgtg |
215 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16790831 |
gattaaaaccgtctaggacaggacatttattcgggtgcatagaaaacatattcttgaggttgaaagggggttgttaaaagagcattatcatcctctgtg |
16790733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University