View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4038_high_57 (Length: 214)
Name: NF4038_high_57
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_57 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 15 - 201
Target Start/End: Original strand, 5128822 - 5129008
Alignment:
| Q |
15 |
gcagagaaataaataagagcagagaaaagaaaaacagtgcagcttctgtgaagaataaaagtctagatgtaatgtgnnnnnnngaaagatgtagtata-n |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5128822 |
gcagagaaataaataagagcagagaaaagaaaaatagtgcagcttctgtgaagaataaaagtctagatgtaatgt-aaaaaaagaaagatgtagtatatt |
5128920 |
T |
|
| Q |
114 |
nnnnnnngtctcaagcaaagtggcaaaagctactgaaatttacatacccaattataaggttcggaataagaactcaaatgaatatgtt |
201 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
5128921 |
tttttttgtctcaagcaaagtggcaaaagccactgaaatttacatacccaattataaggttctgaataagaactcaaatgaatgtgtt |
5129008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University