View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_59 (Length: 207)
Name: NF4038_high_59
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_59 |
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Alignment Details
Target: chr4 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 24 - 201
Target Start/End: Complemental strand, 8672456 - 8672280
Alignment:
| Q |
24 |
gcctcataatctgattacacattattatatagatgcgtataaattaaaactgaaccaactcaatagaaaatcgtaaattaaatctacaaagatcgaaaac |
123 |
Q |
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| T |
8672456 |
gcctcataatctgattacacgttattatatagatgcgtataaattaaaactgaaccaactcaatggaaaatcgtaaactaaatctacaaagatcaaaaac |
8672357 |
T |
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| Q |
124 |
cacatttgattggttgtgttcatgccannnnnnnnattctccccaaacactaaatcatatttcgaccgtctctgctcc |
201 |
Q |
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| T |
8672356 |
cacgtttgattggttgtgtgcatgcca-tttttttattctccccaaacactaaatcatatttcgaccgtctctcctcc |
8672280 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 23344724 - 23344765
Alignment:
| Q |
67 |
ttaaaactgaaccaactcaatag-aaaatcgtaaattaaatc |
107 |
Q |
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| T |
23344724 |
ttaaaactgaaccaactcaatagaaaaatcgtaaattaaatc |
23344765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 23382311 - 23382270
Alignment:
| Q |
67 |
ttaaaactgaaccaactcaatagaaaa-tcgtaaattaaatc |
107 |
Q |
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| T |
23382311 |
ttaaaactgaaccaactcaatagaaaagtcgtaaattaaatc |
23382270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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