View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_high_7 (Length: 501)
Name: NF4038_high_7
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 39829117 - 39828889
Alignment:
| Q |
13 |
catcacttctaagttcaaacgaaggttccgagtacagtttttcgtattgtgtcattcttaacctagtgtgatatcatgttgaataaattcagatctcaat |
112 |
Q |
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| T |
39829117 |
catcacttctaagttcaaacgaaggttccgagtacagtttttcgtattgt--cattcttaacctagtgtgatatcatgttgaataaattcagatctcaat |
39829020 |
T |
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| Q |
113 |
ttcaaaaaatcatctcaaagaattatagtgtcctaccttacatccaacaactcgaaaattgcaacaatatgagacttcaatacaacaatttttattaatt |
212 |
Q |
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| T |
39829019 |
ttcaaaaaatcatctcaaagaattatagtgtcctaccttacatccaacaactggaaaattgcaacaatatgagactttaatacaacaatttttattaatt |
39828920 |
T |
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| Q |
213 |
ctctagtacacctagtg-cgggaggatagtc |
242 |
Q |
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| T |
39828919 |
ctctagtacacctaatgccgggaggatagtc |
39828889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 318 - 469
Target Start/End: Complemental strand, 39828814 - 39828663
Alignment:
| Q |
318 |
caaaatctcatacacatgacataagcactgcattctgagggggtaggcaggaattattagagaatgtttagataaattaatgtattattattatattggg |
417 |
Q |
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| T |
39828814 |
caaaatctcatacacatgacataagcactgcattctgagggggtaggcaggaattattagagaatgtttagataaattaatgtattattattatattggg |
39828715 |
T |
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| Q |
418 |
agttgtagtcctgcattgagtaacatgctataaaattacaaggataagatgt |
469 |
Q |
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| T |
39828714 |
agttgtagtcctgcattgagtaacatgctataaaattacaaggataagatgt |
39828663 |
T |
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