View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4038_high_8 (Length: 492)
Name: NF4038_high_8
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 13 - 476
Target Start/End: Complemental strand, 46733965 - 46733501
Alignment:
| Q |
13 |
aatatcctgaatattgtaaataaagtgctagaaaatccattcattcaatcatttaatttcgaatccgagtttgtccttttgtggcatcaactcagaccta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46733965 |
aatatcctgaatattgtaaataaagtgctagaaaatccattcattcaatcatttaatttcgaatccgagtttgtccttttgtggcatcaactcagaccta |
46733866 |
T |
|
| Q |
113 |
catagcttcattggtgataacttgtgtctctgtgtctccaggtttgtcgtggggaccttttgtatttcattaagtttggtaacgtggtgggtggatgtaa |
212 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46733865 |
catagcttcattagtgataacttgtgtctctgtgtctccaggtttgtcgtggggaccttttgtatttcattaagtttggtaacgtggtgggtggatgtaa |
46733766 |
T |
|
| Q |
213 |
tggaacggaacgggcttcttccttccttcatgnnnnnnntagaaaatgatactttggggtatttatttggagtt--nnnnnnnntaactatttgatgtaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| | |||||||||||||||| |
|
|
| T |
46733765 |
tggaacggaacgggcttcttccttccttcatgccccccctagaaaatgatactttggggtatttatttagaggtaaaaaaaaaataactatttgatgtaa |
46733666 |
T |
|
| Q |
311 |
atatcaaaatataatgtagtttgattagatcagacagtttggttttagcaacaattacattacatatattatatgacgtcaaataatcaatgtatttcaa |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46733665 |
atatcaaaatataatgtagtttgattagatcagacagtttggttttagcaacaattacattacatat-ttatatgacgtcaaataatcaatgtatttcaa |
46733567 |
T |
|
| Q |
411 |
aaataaattagacaagatattaaacatcattcaaccaaaaaatatataggaaacatacatcatata |
476 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46733566 |
aaataaattagacaagatattaaacatcattcaaccaaaaaatatataggaaacatacatcatata |
46733501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University