View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4038_high_9 (Length: 480)

Name: NF4038_high_9
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4038_high_9
NF4038_high_9
[»] chr4 (9 HSPs)
chr4 (11-464)||(2833962-2834415)
chr4 (201-323)||(37306430-37306552)
chr4 (243-300)||(27362634-27362691)
chr4 (202-323)||(31699503-31699624)
chr4 (247-323)||(51475188-51475264)
chr4 (199-242)||(2834224-2834267)
chr4 (274-316)||(2834150-2834192)
chr4 (256-351)||(30111856-30111953)
chr4 (251-308)||(43480327-43480384)
[»] chr1 (8 HSPs)
chr1 (201-323)||(31602094-31602216)
chr1 (201-321)||(19078946-19079066)
chr1 (201-321)||(19126834-19126954)
chr1 (201-323)||(24886072-24886194)
chr1 (244-325)||(14562554-14562634)
chr1 (215-320)||(24733894-24733999)
chr1 (236-320)||(24733806-24733890)
chr1 (247-323)||(29068159-29068235)
[»] chr5 (5 HSPs)
chr5 (220-321)||(40699505-40699606)
chr5 (201-279)||(32153761-32153839)
chr5 (202-279)||(5990587-5990664)
chr5 (247-292)||(42958519-42958564)
chr5 (201-293)||(18237190-18237282)
[»] chr7 (5 HSPs)
chr7 (247-323)||(36738538-36738614)
chr7 (215-325)||(29310444-29310554)
chr7 (201-299)||(557425-557523)
chr7 (215-325)||(42815604-42815714)
chr7 (201-323)||(47822014-47822136)
[»] chr3 (6 HSPs)
chr3 (201-300)||(28215774-28215873)
chr3 (201-299)||(13639437-13639535)
chr3 (201-313)||(42780705-42780817)
chr3 (247-314)||(54140814-54140881)
chr3 (251-320)||(38602893-38602962)
chr3 (202-314)||(48543176-48543288)
[»] chr8 (7 HSPs)
chr8 (201-321)||(33440530-33440650)
chr8 (244-314)||(1311473-1311543)
chr8 (201-270)||(32587548-32587616)
chr8 (201-310)||(45057946-45058055)
chr8 (247-314)||(28700634-28700701)
chr8 (247-301)||(30085424-30085478)
chr8 (262-330)||(13990546-13990614)
[»] chr2 (3 HSPs)
chr2 (198-323)||(5139994-5140119)
chr2 (201-262)||(28644250-28644309)
chr2 (201-270)||(37285192-37285261)


Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 11 - 464
Target Start/End: Original strand, 2833962 - 2834415
Alignment:
Q  11 cataggaagatatgagaaaaatatggtatgttgtctgttatagggaatgaatacagttttgttatgagtggtcattttcctttctcagcaacatacctta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2833962 cataggaagatatgagaaaaatatggtatgttgtctgttatagggaatgaatacagttttgttatgagtggtcattttcctttctcaacaacatacctta 2834061  T
Q  111 tccatgcttttcattcctagcttcaataataaaatctcattccacaatgtcaaaagaataaatcttctctatgtactaagagcagtactataacactcac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2834062 tccatgcttttcattcctagcttcaataataaaatctcattccacaatgtcaaaagaataaatcttctctatgtactaagagcagtactataacactcac 2834161  T
Q  211 tcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagt 310  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  2834162 tcgtttattgagtgaaactcacgtaggtctcgtgctttggaaatggatcccacataaagttgcgagacctgcatgagtttcactcaataaacgagtgagt 2834261  T
Q  311 gttataaagagtgttgaagagaatgttcatattatttctctaaagataaaagaaagttttatgattatacgctgaaggtgtaaaacatatttatgcgatc 410  Q
    |||||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2834262 gttataaagagtgttgaaaagagtgttcatatcatttctctaatgataaaagaaagttttatgattatacgctgaaggtgtaaaacatatttacgcgatc 2834361  T
Q  411 atcaaattatatttgatcatgatataactttgttttattgttgggtcatgaaga 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2834362 atcaaattatatttgatcatgatataactttgttttattgttgggtcatgaaga 2834415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 323
Target Start/End: Complemental strand, 37306552 - 37306430
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataa 300  Q
    |||||||||||   ||||||||||||| ||| || |||  |  || |||||||||||||||||||||||| ||||||||  |||||||||||| |||||     
T  37306552 taacactcactttcttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgagacccacatgagtttcacccaatat 37306453  T
Q  301 gcgagtgagtgttataaagagtg 323  Q
      |||||||||||| | ||||||    
T  37306452 aagagtgagtgttagagagagtg 37306430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 243 - 300
Target Start/End: Original strand, 27362634 - 27362691
Alignment:
Q  243 tactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataa 300  Q
    ||||||||||||||||||||| |||||| |||||| |  ||||||||||| |||||||    
T  27362634 tactttggaaatggatctcacgtaaagtggtgagatccacatgagtttcattcaataa 27362691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 323
Target Start/End: Complemental strand, 31699624 - 31699503
Alignment:
Q  202 aacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataag 301  Q
    |||||||||||  ||||||||||||| ||| || ||| || ||| ||||||||||| | |||||||| | ||||||||  |||| |||| |  ||||| |    
T  31699624 aacactcactctcttattgggtgaaattcatgtgggtatcatacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaatagg 31699525  T
Q  302 cgagtgagtgttataaagagtg 323  Q
     |||||||||||| | ||||||    
T  31699524 agagtgagtgttagagagagtg 31699503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 247 - 323
Target Start/End: Complemental strand, 51475264 - 51475188
Alignment:
Q  247 ttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgttataaagagtg 323  Q
    ||||||||||||| |||||||||| |||||| |  |||| ||||||| ||||||| | |||||||||| | ||||||    
T  51475264 ttggaaatggatcccacataaagtggtgagatccacatgggtttcacccaataagagggtgagtgttagagagagtg 51475188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 242
Target Start/End: Complemental strand, 2834267 - 2834224
Alignment:
Q  199 tataacactcactcgtttattgggtgaaactcacgtaggtctcg 242  Q
    |||||||||||||||||||||| |||||||||| | ||||||||    
T  2834267 tataacactcactcgtttattgagtgaaactcatgcaggtctcg 2834224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 316
Target Start/End: Complemental strand, 2834192 - 2834150
Alignment:
Q  274 gagacctgcatgagtttcactcaataagcgagtgagtgttata 316  Q
    ||||||| | ||||||||||||||||| |||||||||||||||    
T  2834192 gagacctacgtgagtttcactcaataaacgagtgagtgttata 2834150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 351
Target Start/End: Original strand, 30111856 - 30111953
Alignment:
Q  256 gatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgttataaagagtgtt--gaagagaatgttcatattatttctct 351  Q
    |||| |||||||||| |||||| |  |||||||||||| ||||| | |||||||||||  | ||| ||||   |||||||||||||||| ||||||||    
T  30111856 gatcccacataaagtggtgagatccacatgagtttcacccaatatgagagtgagtgtttgagagaatgttagaaagagaatgttcatatcatttctct 30111953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 308
Target Start/End: Original strand, 43480327 - 43480384
Alignment:
Q  251 aaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtga 308  Q
    ||||||||| |||||||||| ||||||||  |||||||||||| ||||| | ||||||    
T  43480327 aaatggatcccacataaagtggtgagacccacatgagtttcacccaataggagagtga 43480384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 31602094 - 31602216
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataa 300  Q
    ||||||||| ||  ||||||| ||||||||| || ||||||  |||||||||||||||| ||| |||||| ||||||||  |||| ||||||  ||||||    
T  31602094 taacactcattctcttattggatgaaactcatgtgggtctcacactttggaaatggatcccacctaaagtggtgagacccacatgtgtttcatccaataa 31602193  T
Q  301 gcgagtgagtgttataaagagtg 323  Q
    | |||||||||||| ||||||||    
T  31602194 gagagtgagtgttaaaaagagtg 31602216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 321
Target Start/End: Original strand, 19078946 - 19079066
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataa 300  Q
    ||||||||||||  ||||||||||||| ||| |  |||  |  || ||||||||||||| |||||||||| ||||||||  |||||||||||| |||||     
T  19078946 taacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcacccaatag 19079045  T
Q  301 gcgagtgagtgttataaagag 321  Q
    | |||||||||||| ||||||    
T  19079046 gagagtgagtgttaaaaagag 19079066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 201 - 321
Target Start/End: Original strand, 19126834 - 19126954
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataa 300  Q
    ||||||||||||  ||||||||||||| ||| |  |||  |  || ||||||||||||| |||||||||| ||||||||  |||||||||||| |||||     
T  19126834 taacactcactctcttattgggtgaaagtcatgcgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcacccaatag 19126933  T
Q  301 gcgagtgagtgttataaagag 321  Q
    | |||||||||||| ||||||    
T  19126934 gagagtgagtgttaaaaagag 19126954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 24886072 - 24886194
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataa 300  Q
    |||||||||||| |||||||||||||| ||| || |||  |  || ||| |||| |||| |||||||||  ||||||||  |||||||||||| |||||     
T  24886072 taacactcactcttttattgggtgaaattcatgtgggtaccacacattgtaaatagatcccacataaagcggtgagacccacatgagtttcacccaatag 24886171  T
Q  301 gcgagtgagtgttataaagagtg 323  Q
    | |||||||||||| | ||||||    
T  24886172 gagagtgagtgttagagagagtg 24886194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 14562634 - 14562554
Alignment:
Q  244 actttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgttataaagagtgtt 325  Q
    |||||||||||||||| |||||||||| |||| || | || |||||||| |||||| | |||||||||||| ||||||||||    
T  14562634 actttggaaatggatcccacataaagtggtgacac-tacaagagtttcattcaataggagagtgagtgttaaaaagagtgtt 14562554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 215 - 320
Target Start/End: Original strand, 24733894 - 24733999
Alignment:
Q  215 ttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgtta 314  Q
    ||||||| |||||| || |  |||||| ||||| |||||||||||  ||||||||| |||||| |  |||| |||| |||||| ||| ||||||||||||    
T  24733894 ttattggctgaaacccatgcgggtctcatacttcggaaatggatccaacataaagtggtgagatccacatgggttttactcaacaagagagtgagtgtta 24733993  T
Q  315 taaaga 320  Q
     |||||    
T  24733994 gaaaga 24733999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 320
Target Start/End: Original strand, 24733806 - 24733890
Alignment:
Q  236 ggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgttataaaga 320  Q
    |||||| |||||||||||||||||  ||||||||| |||||| |  |||| |||| |||||| ||| ||| |||||||| |||||    
T  24733806 ggtctcatactttggaaatggatccaacataaagtggtgagatcgacatgggttttactcaacaagagagcgagtgttagaaaga 24733890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 29068159 - 29068235
Alignment:
Q  247 ttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgttataaagagtg 323  Q
    |||||||| |||| |||||||| | ||||||||  |||||||||||  ||||| | |||||||||||| | ||||||    
T  29068159 ttggaaattgatcccacataaaatggtgagacccacatgagtttcatccaataggagagtgagtgttagagagagtg 29068235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 220 - 321
Target Start/End: Complemental strand, 40699606 - 40699505
Alignment:
Q  220 gggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgttataaag 319  Q
    ||||||||| || || |||||| ||||||||||||||||| || ||||||| ||||||||  |||| ||||||| |||||||  ||||||||||| ||||    
T  40699606 gggtgaaacccatgtgggtctcatactttggaaatggatcccaaataaagtagtgagacccacatgggtttcacccaataagaaagtgagtgttagaaag 40699507  T
Q  320 ag 321  Q
    ||    
T  40699506 ag 40699505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 279
Target Start/End: Complemental strand, 32153839 - 32153761
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacc 279  Q
    ||||||||||||  |||||||||||||| || || | || |  |||||||||||||||| |||||||||| ||||||||    
T  32153839 taacactcactctcttattgggtgaaacccatgtggatcccacactttggaaatggatcccacataaagtggtgagacc 32153761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 5990664 - 5990587
Alignment:
Q  202 aacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacc 279  Q
    ||||||||||| |||||||||||||| ||| || |||  | ||| ||||||||||||| |||||||| | ||||||||    
T  5990664 aacactcactcttttattgggtgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgagacc 5990587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 42958519 - 42958564
Alignment:
Q  247 ttggaaatggatctcacataaagttgtgagacctgcatgagtttca 292  Q
    ||||||||||||| |||||||||| |||||||| ||||||||||||    
T  42958519 ttggaaatggatcccacataaagtggtgagacccgcatgagtttca 42958564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 293
Target Start/End: Complemental strand, 18237282 - 18237190
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcac 293  Q
    |||||||||||| |||||||||||||| ||| || ||| ||  || ||| |||| |||| |||||||||| ||||||||  ||||| ||||||    
T  18237282 taacactcactcttttattgggtgaaattcatgtgggtatcacacattgaaaatagatcccacataaagtggtgagacccacatgaatttcac 18237190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 323
Target Start/End: Original strand, 36738538 - 36738614
Alignment:
Q  247 ttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgttataaagagtg 323  Q
    ||||||||||||| |||||||||| ||||||||  |||||||||||| ||||| | |||||||||||| ||||||||    
T  36738538 ttggaaatggatcccacataaagtggtgagacccacatgagtttcacccaataggagagtgagtgttagaaagagtg 36738614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 325
Target Start/End: Complemental strand, 29310554 - 29310444
Alignment:
Q  215 ttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgtta 314  Q
    |||||| ||||||| ||| | |||| |  ||| |||||||||||| |||||||||| ||||||||  |||||||||||| ||||||   |||||||||||    
T  29310554 ttattgagtgaaacccacatgggtcccacactatggaaatggatcccacataaagtggtgagacccacatgagtttcacccaataaaaaagtgagtgtta 29310455  T
Q  315 taaagagtgtt 325  Q
     ||||||||||    
T  29310454 gaaagagtgtt 29310444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 299
Target Start/End: Complemental strand, 557523 - 557425
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaata 299  Q
    ||||||||||||  ||||||| ||||| ||| || ||| ||  || ||  ||||||||| |||||||||| ||||||||  |||||||||||| |||||    
T  557523 taacactcactctcttattggatgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgagacccacatgagtttcacccaata 557425  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 325
Target Start/End: Original strand, 42815604 - 42815714
Alignment:
Q  215 ttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgtta 314  Q
    ||||||||||||| ||| || |||  || || ||| ||||||||  | |||||||| ||||||||  ||||||||||||  |||||| | ||||||||||    
T  42815604 ttattgggtgaaattcatgtgggtaccgcacattgaaaatggattccccataaagtggtgagacccacatgagtttcacctaataagagggtgagtgtta 42815703  T
Q  315 taaagagtgtt 325  Q
     | ||||||||    
T  42815704 aagagagtgtt 42815714  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 323
Target Start/End: Original strand, 47822014 - 47822136
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataa 300  Q
    |||||||||||| | ||||||||||||  || || |||  |  || ||||||||||||| |||||||||| |||||| |  |||| ||||||| |||||     
T  47822014 taacactcactcttatattgggtgaaatccatgtgggtaccacacattggaaatggatcccacataaagtggtgagatccacatgggtttcacccaatag 47822113  T
Q  301 gcgagtgagtgttataaagagtg 323  Q
      |||||||||||| | ||||||    
T  47822114 aagagtgagtgttagagagagtg 47822136  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 300
Target Start/End: Complemental strand, 28215873 - 28215774
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataa 300  Q
    |||||| |||||  |||||||||||||||||||| ||||||  |||||||||||||| | | ||||||||  |||||||  |||||||||||| ||||||    
T  28215873 taacacccactctcttattgggtgaaactcacgtgggtctcacactttggaaatggaccccgcataaagtgatgagacccacatgagtttcacccaataa 28215774  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 201 - 299
Target Start/End: Original strand, 13639437 - 13639535
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaata 299  Q
    ||||| |||||| |||||||| ||||| ||| || ||| ||  || |||||||||||||||||||||||| ||||||||  |||||||||||| |||||    
T  13639437 taacagtcactcttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgagacccacatgagtttcacccaata 13639535  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 313
Target Start/End: Original strand, 42780705 - 42780817
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataa 300  Q
    ||||||||| ||  ||||||| |||||  || |||||||||  |||| | ||||||||| |||||||||| ||||||||  |||| | ||||||||||||    
T  42780705 taacactcattctcttattggatgaaatccatgtaggtctcacacttagaaaatggatcccacataaagtggtgagacccacatgggattcactcaataa 42780804  T
Q  301 gcgagtgagtgtt 313  Q
    | |||||||||||    
T  42780805 gagagtgagtgtt 42780817  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 54140814 - 54140881
Alignment:
Q  247 ttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgtta 314  Q
    ||||||||||||| |||||||||| |||||||  |||||| ||||||  |||||| ||||||||||||    
T  54140814 ttggaaatggatcccacataaagtggtgagactcgcatgaatttcacctaataagagagtgagtgtta 54140881  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 320
Target Start/End: Original strand, 38602893 - 38602962
Alignment:
Q  251 aaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgttataaaga 320  Q
    ||||||||| |||||||||| |||||||   |||||||||||| ||||| | ||||||||| || |||||    
T  38602893 aaatggatcccacataaagtagtgagactcacatgagtttcacccaataggagagtgagtgctagaaaga 38602962  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 314
Target Start/End: Complemental strand, 48543288 - 48543176
Alignment:
Q  202 aacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataag 301  Q
    |||||||||||  ||||||||||||| ||| || |||  | ||| ||||||||||| | |||||||| | ||||||||  |||| |||| |  ||||| |    
T  48543288 aacactcactctcttattgggtgaaattcatgtgggtagcatacattggaaatggaccccacataaaatggtgagacccacatgtgtttaatccaatagg 48543189  T
Q  302 cgagtgagtgtta 314  Q
     ||||||||||||    
T  48543188 agagtgagtgtta 48543176  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 201 - 321
Target Start/End: Complemental strand, 33440650 - 33440530
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataa 300  Q
    ||||| ||||||  ||||||||||||| ||| || |||  |  || ||||||||||||| |||||||||| ||||||||  ||||||||||||  ||||     
T  33440650 taacattcactctcttattgggtgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgagacccacatgagtttcacctaatag 33440551  T
Q  301 gcgagtgagtgttataaagag 321  Q
    | |||||||||||| ||||||    
T  33440550 gagagtgagtgttagaaagag 33440530  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 314
Target Start/End: Complemental strand, 1311543 - 1311473
Alignment:
Q  244 actttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgtta 314  Q
    |||||||||||||||| |||||||| | |||||||| ||||| ||||||| ||||||| ||  ||||||||    
T  1311543 actttggaaatggatcccacataaaatggtgagacccgcatgggtttcacccaataagagaaggagtgtta 1311473  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 32587548 - 32587616
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagt 270  Q
    ||||||||||||  |||||||||||||| || |||||||||| | |||||||| ||||| ||||||||||    
T  32587548 taacactcactctcttattgggtgaaacccatgtaggtctcgcattttggaaa-ggatcccacataaagt 32587616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 310
Target Start/End: Complemental strand, 45058055 - 45057946
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataa 300  Q
    ||||||||||||  ||||||| ||||||| | ||  |||||  |||||||||||||||| ||||||||||   ||||||  ||| |||||||| |||||     
T  45058055 taacactcactctcttattggttgaaacttatgtgagtctcacactttggaaatggatcccacataaagtgacgagacccacataagtttcacccaatag 45057956  T
Q  301 gcgagtgagt 310  Q
    | ||||||||    
T  45057955 gagagtgagt 45057946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 314
Target Start/End: Original strand, 28700634 - 28700701
Alignment:
Q  247 ttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgtta 314  Q
    ||||||||| ||| |||||||||| |||||||   ||||||||||||||||||   ||||||||||||    
T  28700634 ttggaaatgaatcccacataaagtggtgagactcacatgagtttcactcaatagaagagtgagtgtta 28700701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 301
Target Start/End: Complemental strand, 30085478 - 30085424
Alignment:
Q  247 ttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaataag 301  Q
    ||||||||||||| |||||||||| |||||| |  |||||||||||| |||||||    
T  30085478 ttggaaatggatcccacataaagtggtgagatccacatgagtttcacccaataag 30085424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 13990546 - 13990614
Alignment:
Q  262 acataaagttgtgagacctgcatgagtttcactcaataagcgagtgagtgttataaagagtgttgaaga 330  Q
    ||||||||| ||||||||  |||||||||||| ||||||| ||||| |||||| |   |||||||||||    
T  13990546 acataaagtggtgagacccacatgagtttcacccaataagagagtgggtgttagagcaagtgttgaaga 13990614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 323
Target Start/End: Complemental strand, 5140119 - 5139994
Alignment:
Q  198 ctataacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagttgtgagacctgcatgagtttcactcaa 297  Q
    |||| ||||||||||  |||||| |||||| ||| || |||  |  || ||| ||||||||| |||||||||| |||| ||| ||||||||||||| |||    
T  5140119 ctatgacactcactctcttattgagtgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgaaacccgcatgagtttcacccaa 5140020  T
Q  298 taagcgagtgagtgttataaagagtg 323  Q
    || | |||||||||||| | ||||||    
T  5140019 taggagagtgagtgttagagagagtg 5139994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 28644309 - 28644250
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctca 262  Q
    ||||||||| |  ||||||||||||||||||||| ||||||  |||||||||||| ||||||    
T  28644309 taacactcatttttttattgggtgaaactcacgtgggtctc--actttggaaatgaatctca 28644250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 37285261 - 37285192
Alignment:
Q  201 taacactcactcgtttattgggtgaaactcacgtaggtctcgtactttggaaatggatctcacataaagt 270  Q
    |||||||||||| |||||||||||||| ||| || |||  |  || ||||||||||||||||| ||||||    
T  37285261 taacactcactcttttattgggtgaaattcatgtgggtaccacacattggaaatggatctcacgtaaagt 37285192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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