View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_10 (Length: 471)
Name: NF4038_low_10
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_10 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0095 (1 HSPs) |
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| [»] scaffold0065 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 62 - 471
Target Start/End: Complemental strand, 7451871 - 7451465
Alignment:
| Q |
62 |
ttgatttcgaattcgcgatctctgattaagctggaagaggcttaaatcatctcggcaaaatgcttggttaaatggctttaattttggcacggtgtgcgac |
161 |
Q |
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| T |
7451871 |
ttgatttcgaattcgcgatctctgattaagctggaagaggcttaaatcatctcagcaaaatgcttggttaaatggctttaattttggcacggtgtgcgac |
7451772 |
T |
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| Q |
162 |
tagggttagaaatgcttacatagtattgacatgaggcttgataatnnnnnnntattgacataggagtttggaatgatgatgacaatattggagatagtta |
261 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7451771 |
tagggttagaaatgcttacatagtattgacatgagtcttgataaaaaaaaagtattgacataagagtttggaatgatgatgacaatattggagatagtta |
7451672 |
T |
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| Q |
262 |
gtggttgcatattgggcacagaagaatccaattagagcaaaactaattcaaatggaatttgagtctcaattcaccatgtgtgtgtttgatttcctgtttg |
361 |
Q |
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| T |
7451671 |
gtggttgcatat-gggcagagaagaatccaattagagcaaaactaatccaaatggaatttgagtctcaattcactatgtgtgtgtttggtttcctgtttg |
7451573 |
T |
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| Q |
362 |
caacacacacgttttctaatacgtttttgtcgtgttttctagaagctccaaatagtagcttttatcctaacgtagttttttgtcgtaattttcatcaaac |
461 |
Q |
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| T |
7451572 |
ta--acacacgttttctaatgcatttttgtcgtactttctagaagctccaaatactaacttttatattaacgtgattttttgtcgtaattttcatcaaac |
7451475 |
T |
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| Q |
462 |
tccgttttgc |
471 |
Q |
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||| |||||| |
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| T |
7451474 |
tccattttgc |
7451465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 7451923 - 7451887
Alignment:
| Q |
8 |
gagcagagatctagttgtttaataatatttgctgttt |
44 |
Q |
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| T |
7451923 |
gagcagagatctagttgtttaataatatttgctgttt |
7451887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 466
Target Start/End: Complemental strand, 35998194 - 35998111
Alignment:
| Q |
383 |
cgtttttgtcgtgttttctagaagctccaaatagtagcttttatcctaacgtagttttttgtcgtaattttcatcaaactccgt |
466 |
Q |
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| T |
35998194 |
cgtttttgtcgtgatttttagaagctccaaatactaacttcttcgctaacgtaattttttgtcgtgatttccatcaaacaccgt |
35998111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 25992420 - 25992453
Alignment:
| Q |
8 |
gagcagagatctagttgtttaataatatttgctg |
41 |
Q |
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| T |
25992420 |
gagcagagatctggttgtttaataatatttgctg |
25992453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0095 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 471
Target Start/End: Complemental strand, 37944 - 37856
Alignment:
| Q |
383 |
cgtttttgtcgtgttttctagaagctccaaatagtagcttttatcctaacgtagttttttgtcgtaattttcatcaaactccgttttgc |
471 |
Q |
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| T |
37944 |
cgtttttgccgtgattttcagaagctccaaatactagcttctttgctaacgtggttttttgccgtgatttccatcgaacactgttttgc |
37856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 471
Target Start/End: Original strand, 49538 - 49610
Alignment:
| Q |
399 |
tctagaagctccaaatagtagcttttatcctaacgtagttttttgtcgtaattttcatcaaactccgttttgc |
471 |
Q |
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| T |
49538 |
tctagaagctctaaatactaacttctacgcttacatggttttttgtcgtgattttcattaaactccgttttgc |
49610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 471
Target Start/End: Original strand, 39396857 - 39396945
Alignment:
| Q |
383 |
cgtttttgtcgtgttttctagaagctccaaatagtagcttttatcctaacgtagttttttgtcgtaattttcatcaaactccgttttgc |
471 |
Q |
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| T |
39396857 |
cgtttttgccgtgattttcagaagctccaaatactagcttctttgctaacgtggttttttgccgtgatttccatcgaacactgttttgc |
39396945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Complemental strand, 41117630 - 41117594
Alignment:
| Q |
8 |
gagcagagatctagttgtttaataatatttgctgttt |
44 |
Q |
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| T |
41117630 |
gagcagagatctagttgtttaataaaatttgttgttt |
41117594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 463
Target Start/End: Complemental strand, 622089 - 622009
Alignment:
| Q |
383 |
cgtttttgtcgtgttttctagaagctccaaatagtagcttttatcctaacgtagttttttgtcgtaattttcatcaaactc |
463 |
Q |
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| T |
622089 |
cgtttttgccgtgatttttaaaagctccaaatactagcttctacgttaacgtggttttttgctgtgattttcatcaaactc |
622009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 404 - 460
Target Start/End: Complemental strand, 16118573 - 16118517
Alignment:
| Q |
404 |
aagctccaaatagtagcttttatcctaacgtagttttttgtcgtaattttcatcaaa |
460 |
Q |
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| T |
16118573 |
aagctccaaatactagcttctacgctaacgtggttttttgtcgtgatttccatcaaa |
16118517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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