View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_11 (Length: 439)
Name: NF4038_low_11
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 37128922 - 37129245
Alignment:
| Q |
20 |
gactcttcatttttactcaaaagctctcaatttatcaaaatgtatctttcgatgacacagatctattggaatggagtattttcagattgacttattttta |
119 |
Q |
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| T |
37128922 |
gactcttcatttttactcaaaagctctcaatttatcaaaatgtatctttcgataacacaaatctattggaatggagtattttcagattgatttattttta |
37129021 |
T |
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| Q |
120 |
ctatccatcaaaaactattttttgatcgacannnnnnnncagggttgagcgacctaagaacctaaagaacaaccttattatccttatcaattcatgctat |
219 |
Q |
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| T |
37129022 |
ctatccatcaaaaactattttttgatcgacattttttttcagggttgagcgacctaagaacctaaagaacaaccttattatccttatcaattcatgctat |
37129121 |
T |
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| Q |
220 |
gtttcaggctaatttaagagggtccctgttaacccattttagcatcccctactcataagagcatttttttctacccatcagannnnnnnnnngcaattac |
319 |
Q |
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| T |
37129122 |
gtttcaggctaatttaagagggtccctgttaacccattttagcatcccctactcataagagcatttttttctacccatcagaatttttttttgcaattac |
37129221 |
T |
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| Q |
320 |
ttatacctgtcagctcaattacct |
343 |
Q |
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| T |
37129222 |
ttatacctgtcagctcaattacct |
37129245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 357 - 428
Target Start/End: Original strand, 37129236 - 37129307
Alignment:
| Q |
357 |
tcaattacctatacgaggcattgagcttgctttcctgattttacacgcttgtataccattttcttcattcat |
428 |
Q |
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| T |
37129236 |
tcaattacctatacgaggcattgagcttgctttcctgattttacacgcttgtagaccattttcttcattcat |
37129307 |
T |
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