View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4038_low_12 (Length: 438)

Name: NF4038_low_12
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4038_low_12
NF4038_low_12
[»] chr3 (2 HSPs)
chr3 (18-242)||(3176352-3176577)
chr3 (325-426)||(3176660-3176761)
[»] chr1 (3 HSPs)
chr1 (32-171)||(24541566-24541708)
chr1 (375-424)||(24541944-24541993)
chr1 (212-240)||(24541798-24541826)
[»] chr5 (3 HSPs)
chr5 (18-171)||(20963586-20963741)
chr5 (193-240)||(20963457-20963504)
chr5 (377-417)||(20963241-20963281)
[»] chr2 (3 HSPs)
chr2 (375-417)||(41536650-41536692)
chr2 (32-69)||(41525483-41525520)
chr2 (193-237)||(41525539-41525583)
[»] chr6 (1 HSPs)
chr6 (96-157)||(14675445-14675506)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 3176352 - 3176577
Alignment:
Q  18 agtatcattgcgtatttctttatgtgtggtaaacattgtttctttatttatgnnnnnnnagttaatacaaattcaatgagctttatttgaatttaaggga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  3176352 agtatcattgcgtatttctttatgtgtggtaaacattgtttctttatttatgtttttttagttaatacaaattcaatgagctttatttgaatttaaggga 3176451  T
Q  118 caaattaaattgtctctttattcatgcttgttagtgcaagacatcaggagaaatactgaagtgtaggaaacttggtttttaaaggaagggagaatataca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3176452 caaattaaattgtctctttattcatgcttgttagtgcaagacatcaggagaaatactgaagtgtaggaaacttggtttttaaaggaagggagaatataca 3176551  T
Q  218 tatggtatggt-atatatttacacac 242  Q
    ||||||||||| ||||||||||||||    
T  3176552 tatggtatggtaatatatttacacac 3176577  T

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Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 325 - 426
Target Start/End: Original strand, 3176660 - 3176761
Alignment:
Q  325 tctgtttatatattgatctgtttgataaaggtgcttgtttctgaagaacaacatctttgcaattatcaaaataatttcttgctctgtctgtattttgtcc 424  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||    
T  3176660 tctgtttatatattgatctgtttgataaaggtgcttgtttctgaagaacaacatctttgcaattgtcaaaaaaaattcttgctctgtctgtattttgtcc 3176759  T
Q  425 ct 426  Q
    ||    
T  3176760 ct 3176761  T

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Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 171
Target Start/End: Original strand, 24541566 - 24541708
Alignment:
Q  32 tttctttatgtgtggtaaacattgtttctttatttatgnnnnnnnagttaata--caaattcaatgagctttatttgaatttaagggacaaattaaattg 129  Q
    |||||||||||||| ||||||||||||||||| |||||       |||||||   |||||||| ||| |||||||||||||||||||  ||| ||| |||    
T  24541566 tttctttatgtgtgataaacattgtttctttaattatgtttttt-agttaatgaccaaattcattgaactttatttgaatttaaggggaaaaataacttg 24541664  T
Q  130 t--ctctttattcatgcttgttagtgcaagacatcaggagaaat 171  Q
    |  ||||||||||||||||||||||||||||||| |||||||||    
T  24541665 tttctctttattcatgcttgttagtgcaagacataaggagaaat 24541708  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 375 - 424
Target Start/End: Original strand, 24541944 - 24541993
Alignment:
Q  375 acatctttgcaattatcaaaataatttcttgctctgtctgtattttgtcc 424  Q
    |||||||||||||| ||||||| ||||||| |||||||| ||||||||||    
T  24541944 acatctttgcaattctcaaaattatttctttctctgtctttattttgtcc 24541993  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 240
Target Start/End: Original strand, 24541798 - 24541826
Alignment:
Q  212 tatacatatggtatggtatatatttacac 240  Q
    |||||||||||||||||||||||||||||    
T  24541798 tatacatatggtatggtatatatttacac 24541826  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 20963741 - 20963586
Alignment:
Q  18 agtatcattgcgtatttctttatgtgtggtaaacattgtttctttatttatgnnnnnnnagttaatac--aaattcaatgagctttatttgaatttaagg 115  Q
    ||||||||||||| ||| ||| |||||||||||||||||||||||| |||||       |||| || |  ||||| | |||  |||||||||||||||||    
T  20963741 agtatcattgcgttttt-tttgtgtgtggtaaacattgtttctttaattatgtttttt-agttgatgcccaaatttattgaaatttatttgaatttaagg 20963644  T
Q  116 gacaaattaaattgtctc--tttattcatgcttgttagtgcaagacatcaggagaaat 171  Q
    | ||||||||| ||| ||  |||||||||||||||||||||||||||| | |||||||    
T  20963643 ggcaaattaaactgtttccttttattcatgcttgttagtgcaagacataaagagaaat 20963586  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 20963504 - 20963457
Alignment:
Q  193 tttttaaaggaagggagaatatacatatggtatggtatatatttacac 240  Q
    ||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  20963504 ttttttaaggaagggggaatatacgtatggtatggtatatatttacac 20963457  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 417
Target Start/End: Complemental strand, 20963281 - 20963241
Alignment:
Q  377 atctttgcaattatcaaaataatttcttgctctgtctgtat 417  Q
    |||||||||||| ||||||| |||||||||||| |||||||    
T  20963281 atctttgcaattgtcaaaattatttcttgctctatctgtat 20963241  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 417
Target Start/End: Complemental strand, 41536692 - 41536650
Alignment:
Q  375 acatctttgcaattatcaaaataatttcttgctctgtctgtat 417  Q
    |||||||||||||| ||||||| |||||||| |||||||||||    
T  41536692 acatctttgcaattgtcaaaattatttcttgttctgtctgtat 41536650  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 41525483 - 41525520
Alignment:
Q  32 tttctttatgtgtggtaaacattgtttctttatttatg 69  Q
    ||||||||||||| ||||||| ||||||||||||||||    
T  41525483 tttctttatgtgtagtaaacaatgtttctttatttatg 41525520  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 193 - 237
Target Start/End: Original strand, 41525539 - 41525583
Alignment:
Q  193 tttttaaaggaagggagaatatacatatggtatggtatatattta 237  Q
    ||||| |||||||||||||||||| |||||  |||||||||||||    
T  41525539 ttttttaaggaagggagaatatacgtatggcgtggtatatattta 41525583  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 14675445 - 14675506
Alignment:
Q  96 agctttatttgaatttaagggacaaattaaattgtctctttattcatgcttgttagtgcaag 157  Q
    ||||||| ||||||||||| |  |||||||||||| |||||||| || ||||||||| ||||    
T  14675445 agctttaattgaatttaagaggaaaattaaattgtttctttatttattcttgttagttcaag 14675506  T

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