View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_14 (Length: 409)
Name: NF4038_low_14
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_14 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 221 - 409
Target Start/End: Original strand, 10263165 - 10263353
Alignment:
| Q |
221 |
gtttaaagattatacattaatatttaaaattgtattacaaagttattcaatcggatttcaccttggtgccacttgtannnnnnncttcatagaatacctc |
320 |
Q |
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| T |
10263165 |
gtttaaagattatacattaatatttaaaattgtattacaaagttattcaatcggatttcaccttggtgccacttaatatttttttttcatagaatacctc |
10263264 |
T |
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| Q |
321 |
acaaacatctatgtgacaaaatctgattaaatgactaagtaaaatatttctacatatcagagcatactctttaaactacttattagatt |
409 |
Q |
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| T |
10263265 |
acaaacatctatgtgacaaaatctgattaaatgactaagtaaaatatttgtacatatcagagcatactctttaaactacttattagatt |
10263353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 221 - 409
Target Start/End: Original strand, 10271338 - 10271523
Alignment:
| Q |
221 |
gtttaaagattatacattaatatttaaaattgtattacaaagttattcaatcggatttcaccttggtgccac-ttgtannnnnnncttcatagaatacct |
319 |
Q |
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| T |
10271338 |
gtttaaaggttatgcattaatatttaaaactgtattacaaagttattcaatcagatttaaccttggtgccacattatatttt----ttcatagtatacct |
10271433 |
T |
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| Q |
320 |
cacaaacatctatgtgacaaaatctgattaaatgactaagtaaaatatttctacatatcagagcatactctttaaactacttattagatt |
409 |
Q |
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| T |
10271434 |
cataaaaacctatgtgacaaaatctgattagatgactaagtaaaatatttgtacatatcagagcatactctttaaactacttattagatt |
10271523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 107 - 197
Target Start/End: Original strand, 10241060 - 10241150
Alignment:
| Q |
107 |
tgaagatatggcagagacgtacttggatgttggaaagtgcttgaggcagaggataaaactaattgatgaatggatcaaaagtagaaaatag |
197 |
Q |
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| T |
10241060 |
tgaagatatggcagagacatacttggatgttggaaagtgcttgaggcagaggataaaactaattgaacaatggatcaaaagtagaaaatag |
10241150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 309 - 409
Target Start/End: Original strand, 10241289 - 10241389
Alignment:
| Q |
309 |
atagaatacctcacaaacatctatgtgacaaaatctgattaaatgactaagtaaaatatttctacatatcagagcatactctttaaactacttattagat |
408 |
Q |
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| T |
10241289 |
atagaatttctcacaaacatatatgtgacaaaatctgattagatgactaagtaaaatatttatacatataagtgcatattctttaaactacttattagat |
10241388 |
T |
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| Q |
409 |
t |
409 |
Q |
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| T |
10241389 |
t |
10241389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 221 - 285
Target Start/End: Original strand, 10241187 - 10241252
Alignment:
| Q |
221 |
gtttaaagattatacattaatatt-taaaattgtattacaaagttattcaatcggatttcaccttg |
285 |
Q |
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| T |
10241187 |
gtttaaagattatgcattaatattataaaattgtattacaaagtttttcaatcagatttcaccttg |
10241252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 313 - 409
Target Start/End: Original strand, 10282926 - 10283023
Alignment:
| Q |
313 |
aatacctcacaaa-catctatgtgacaaaatctgattaaatgactaagtaaaatatttctacatatcagagcatactctttaaactacttattagatt |
409 |
Q |
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||||||||||||| ||||||||||| | || |||||| |||| |||||||||||||||||||||| | |||| ||||||||||| |||||||||| |
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| T |
10282926 |
aatacctcacaaaacatctatgtgatgagatttgattagatgaataagtaaaatatttctacatatttgtgcatcttctttaaactatttattagatt |
10283023 |
T |
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