View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4038_low_15 (Length: 406)

Name: NF4038_low_15
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4038_low_15
NF4038_low_15
[»] chr6 (26 HSPs)
chr6 (19-397)||(5372275-5372653)
chr6 (245-396)||(2939094-2939245)
chr6 (245-397)||(5155978-5156130)
chr6 (245-341)||(2657116-2657212)
chr6 (284-395)||(5398226-5398337)
chr6 (303-397)||(5334363-5334457)
chr6 (274-397)||(5351578-5351701)
chr6 (274-397)||(5177917-5178040)
chr6 (274-397)||(5279742-5279865)
chr6 (274-397)||(5688897-5689020)
chr6 (279-397)||(5180773-5180891)
chr6 (274-382)||(5100812-5100920)
chr6 (274-382)||(5135913-5136021)
chr6 (245-389)||(5242477-5242621)
chr6 (277-397)||(5346207-5346327)
chr6 (245-397)||(5427078-5427230)
chr6 (279-386)||(5256113-5256220)
chr6 (276-397)||(5098389-5098510)
chr6 (274-397)||(5352857-5352980)
chr6 (279-397)||(5439189-5439307)
chr6 (301-390)||(5448794-5448883)
chr6 (257-377)||(5072659-5072779)
chr6 (279-386)||(5283223-5283330)
chr6 (274-397)||(5065443-5065566)
chr6 (274-397)||(5126623-5126746)
chr6 (276-377)||(23127306-23127407)
[»] chr3 (4 HSPs)
chr3 (284-398)||(47985397-47985511)
chr3 (284-398)||(48003971-48004085)
chr3 (284-398)||(47994684-47994798)
chr3 (284-398)||(48013256-48013370)
[»] chr7 (1 HSPs)
chr7 (274-397)||(36212915-36213038)
[»] chr8 (1 HSPs)
chr8 (176-217)||(15691061-15691102)
[»] chr4 (6 HSPs)
chr4 (274-324)||(7884149-7884199)
chr4 (341-378)||(25569037-25569074)
chr4 (341-373)||(6544239-6544271)
chr4 (341-373)||(6620328-6620360)
chr4 (341-373)||(6729618-6729650)
chr4 (276-312)||(25569106-25569142)
[»] scaffold0286 (1 HSPs)
scaffold0286 (341-373)||(8010-8042)


Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 397
Target Start/End: Complemental strand, 5372653 - 5372275
Alignment:
Q  19 tgtaactaacttgattagttgtcaaatagttagttactatatagtatagatgagtacacaatatcttatcttgttccctcatgtaacaaactctatataa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372653 tgtaactaacttgattagttgtcaaatagttagttactatatagtatagatgagtacacaatatcttatcttgttccctcatgtaacaaactctatataa 5372554  T
Q  119 gctgtacttccttatattacaagttaatgaaaatctcattccctttttcacattttactctctttctttctctctttacatcaaagttcatcttctcaac 218  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5372553 gctgtacttccttatattacaagttaataaaaatctcattccctttttcacatttttctctctttctttctctctttacatcaaagttcatcttctcaac 5372454  T
Q  219 actcctcttcagtagagaatctcttgacatgatacaactccattgttttggaaactggttcatcgtatacgagataaattgttgtcttcttcacaatgaa 318  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372453 actcctcatcagtagagaatctcttgacatgatacaactccattgttttggaaactggttcatcgtatacgagataaattgttgtcttcttcacaatgaa 5372354  T
Q  319 atcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactaccctctgcccctcttcatct 397  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5372353 atcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgatactaccctctgcccctcttcatct 5372275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 245 - 396
Target Start/End: Complemental strand, 2939245 - 2939094
Alignment:
Q  245 acatgatacaactccattgttttggaaactggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacct 344  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||    
T  2939245 acatgatacaactccattgttctggaaactggttcatcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacct 2939146  T
Q  345 ccactttgttaccaggttctagacttgatactaccctctgcccctcttcatc 396  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  2939145 ccactttgttaccaggttatagacttgatactaccctctgcccttcttcatc 2939094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 245 - 397
Target Start/End: Original strand, 5155978 - 5156130
Alignment:
Q  245 acatgatacaactccattgttttggaaactggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacct 344  Q
    |||||||||| ||||||||| || |||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |||||| ||||||||||||||    
T  5155978 acatgatacagctccattgtatttgaaactggttcatcgtatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacct 5156077  T
Q  345 ccactttgttaccaggttctagacttgatactaccctctgcccctcttcatct 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5156078 ccactttgttaccaggttctagacttgatactaccctctgcccctcttcatct 5156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 245 - 341
Target Start/End: Original strand, 2657116 - 2657212
Alignment:
Q  245 acatgatacaactccattgttttggaaactggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatgga 341  Q
    ||||||||||||||||||||||| |||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  2657116 acatgatacaactccattgttttcgaaactggttaattgtatacgagataaattgttgccttcttcacaatgaaatcattctcgaatacaaaatgga 2657212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 284 - 395
Target Start/End: Complemental strand, 5398337 - 5398226
Alignment:
Q  284 tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct 383  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||    ||||| ||||||||||||||||||| ||||||||||||||| |    
T  5398337 tatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactacccttt 5398238  T
Q  384 gcccctcttcat 395  Q
    ||||||||||||    
T  5398237 gcccctcttcat 5398226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 303 - 397
Target Start/End: Complemental strand, 5334457 - 5334363
Alignment:
Q  303 tcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactaccctctgcccctcttcatct 397  Q
    ||||||||| ||||||||||||||||| |||||||  ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  5334457 tcttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatct 5334363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 274 - 397
Target Start/End: Complemental strand, 5351701 - 5351578
Alignment:
Q  274 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgat 373  Q
    ||||||||| ||||||||||||| |  |||||| ||||||||| |||||||||||| |||||||  |||||||||||||||||  ||||||| |||||||    
T  5351701 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgat 5351602  T
Q  374 actaccctctgcccctcttcatct 397  Q
    |||| |||||||||||| ||||||    
T  5351601 actaacctctgcccctcctcatct 5351578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 274 - 397
Target Start/End: Complemental strand, 5178040 - 5177917
Alignment:
Q  274 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgat 373  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||| | ||||| | ||||| |   |||||||||||||||| |||||||| |||||||    
T  5178040 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgat 5177941  T
Q  374 actaccctctgcccctcttcatct 397  Q
    ||||| ||||| ||||||||||||    
T  5177940 actactctctgaccctcttcatct 5177917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 274 - 397
Target Start/End: Complemental strand, 5279865 - 5279742
Alignment:
Q  274 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgat 373  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||| | ||||| | ||||| |   |||||||||||||||| |||||||| |||||||    
T  5279865 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgat 5279766  T
Q  374 actaccctctgcccctcttcatct 397  Q
    ||||| ||||| ||||||||||||    
T  5279765 actactctctgaccctcttcatct 5279742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 274 - 397
Target Start/End: Original strand, 5688897 - 5689020
Alignment:
Q  274 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgat 373  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||| | ||||| | |||| ||   |||||||||||||||| |||||||| |||||||    
T  5688897 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 5688996  T
Q  374 actaccctctgcccctcttcatct 397  Q
    ||||| ||||| ||||||||||||    
T  5688997 actactctctgtccctcttcatct 5689020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 279 - 397
Target Start/End: Original strand, 5180773 - 5180891
Alignment:
Q  279 catcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactac 378  Q
    |||| ||||| |||||||||| |||||||||||||||||||   ||||| | |||||||  |||||||||||||||||| |||||||  |||||||||||    
T  5180773 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 5180872  T
Q  379 cctctgcccctcttcatct 397  Q
    |||||| ||||||||||||    
T  5180873 cctctgaccctcttcatct 5180891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 5100812 - 5100920
Alignment:
Q  274 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgat 373  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||   ||||| | ||||| |  |||||||||||||||||| ||||||| |||||||    
T  5100812 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5100911  T
Q  374 actaccctc 382  Q
    |||||||||    
T  5100912 actaccctc 5100920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 5135913 - 5136021
Alignment:
Q  274 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgat 373  Q
    ||||||||||||||||||||||| || |||||| ||||||||||||   ||||| | ||||| |  |||||||||||||||||| ||||||| |||||||    
T  5135913 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5136012  T
Q  374 actaccctc 382  Q
    |||||||||    
T  5136013 actaccctc 5136021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 389
Target Start/End: Original strand, 5242477 - 5242621
Alignment:
Q  245 acatgatacaactccattgttttggaaactggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacct 344  Q
    |||||||| |||||| || || ||  || ||||||||| ||||||||||||| |  |||||||||||||||||||   ||||| | |||||||  |||||    
T  5242477 acatgatataactccttttttctgccaattggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacct 5242576  T
Q  345 ccactttgttaccaggttctagacttgatactaccctctgcccct 389  Q
    ||||||||||||||||||||| |||| ||||||| ||| ||||||    
T  5242577 ccactttgttaccaggttctatacttcatactactctcagcccct 5242621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 277 - 397
Target Start/End: Complemental strand, 5346327 - 5346207
Alignment:
Q  277 ttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatact 376  Q
    |||||| |||| ||||||||||| ||||||||||||||||||| ||||||| | |||||     ||||||||||||||||||||||||| |||||||||     
T  5346327 ttcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgataca 5346228  T
Q  377 accctctgcccctcttcatct 397  Q
    || ||||| ||||| ||||||    
T  5346227 actctctggccctcctcatct 5346207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 245 - 397
Target Start/End: Complemental strand, 5427230 - 5427078
Alignment:
Q  245 acatgatacaactccattgttttggaaactggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacct 344  Q
    |||||||| ||||||||| |||||  || ||||||||| ||||||||||||| |  ||||||| |||||| ||||   ||||| | |||||||  |||||    
T  5427230 acatgatataactccatttttttgccaattggttcatcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacct 5427131  T
Q  345 ccactttgttaccaggttctagacttgatactaccctctgcccctcttcatct 397  Q
    ||| ||||||||||||||||| |||||||||||| || | |||||| ||||||    
T  5427130 ccattttgttaccaggttctatacttgatactactctttccccctcctcatct 5427078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 279 - 386
Target Start/End: Original strand, 5256113 - 5256220
Alignment:
Q  279 catcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactac 378  Q
    |||| ||||| | |||||||| |||||||||||||||||||||||||| || ||||||   |||||||||||||||||| ||||| | |||||||| |||    
T  5256113 catcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattac 5256212  T
Q  379 cctctgcc 386  Q
    ||||||||    
T  5256213 cctctgcc 5256220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 276 - 397
Target Start/End: Complemental strand, 5098510 - 5098389
Alignment:
Q  276 gttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatac 375  Q
    ||||||| ||||| ||||||| || |||||| ||||||||||||   ||||||| ||||| |  |||||||||||||||||||||||||| ||||||||     
T  5098510 gttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggttctatacttgatat 5098411  T
Q  376 taccctctgcccctcttcatct 397  Q
    ||||||||| | ||| ||||||    
T  5098410 taccctctggctctcctcatct 5098389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 274 - 397
Target Start/End: Original strand, 5352857 - 5352980
Alignment:
Q  274 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgat 373  Q
    ||||| ||| ||||| ||||||||||||||||||||||| ||||||  |||||||| ||||| |   ||||| ||||||| |||||| || | |||||||    
T  5352857 tggtttatcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttgat 5352956  T
Q  374 actaccctctgcccctcttcatct 397  Q
    ||||| ||||||||||| ||||||    
T  5352957 actactctctgcccctcctcatct 5352980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 279 - 397
Target Start/End: Complemental strand, 5439307 - 5439189
Alignment:
Q  279 catcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactac 378  Q
    |||| ||||||||||||  || |||||| ||  ||||||||||||||| || |||||||   ||||||||||||||||||||||||| |||||||  ||     
T  5439307 catcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgattttaa 5439208  T
Q  379 cctctgcccctcttcatct 397  Q
    |||||||||||| ||||||    
T  5439207 cctctgcccctcctcatct 5439189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 301 - 390
Target Start/End: Complemental strand, 5448883 - 5448794
Alignment:
Q  301 tgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactaccctctgcccctc 390  Q
    |||||||| |||| ||||||||||||||| |||||||  || |||||||||||| || ||||||| ||||||||||| ||||||||||||    
T  5448883 tgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaacctctgcccctc 5448794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 257 - 377
Target Start/End: Original strand, 5072659 - 5072779
Alignment:
Q  257 tccattgttttggaaactggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttac 356  Q
    ||||||||||||  || || ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| | |||||     |||||||||| |||||    
T  5072659 tccattgttttgccaattgattcatcgtatatgagataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttac 5072758  T
Q  357 caggttctagacttgatacta 377  Q
    |||| |||| |||||||||||    
T  5072759 caggctctatacttgatacta 5072779  T

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Target: chr6; HSP #23
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 279 - 386
Target Start/End: Original strand, 5283223 - 5283330
Alignment:
Q  279 catcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactac 378  Q
    |||| ||||| |||||||||| |||||||||||||||||||   || || | ||||||   |||||||||||||||||| ||||| | |||||||| |||    
T  5283223 catcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatgacctccactttgttacctggttcgatacttgatattac 5283322  T
Q  379 cctctgcc 386  Q
    ||||||||    
T  5283323 cctctgcc 5283330  T

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Target: chr6; HSP #24
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 397
Target Start/End: Original strand, 5065443 - 5065566
Alignment:
Q  274 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgat 373  Q
    ||||||||| |||| |||||||| ||||||| ||||||||| |||| | ||||| | ||||| |   |  |||||||| || |||||||| | |||||||    
T  5065443 tggttcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgat 5065542  T
Q  374 actaccctctgcccctcttcatct 397  Q
    ||||| ||||||||||| ||||||    
T  5065543 actactctctgcccctcctcatct 5065566  T

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Target: chr6; HSP #25
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 274 - 397
Target Start/End: Original strand, 5126623 - 5126746
Alignment:
Q  274 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgat 373  Q
    ||||||||| |||| ||||||||  | ||||||||||||||||||| | ||||  | ||||| |   | ||| ||||||||||||| ||||| |||||||    
T  5126623 tggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgat 5126722  T
Q  374 actaccctctgcccctcttcatct 397  Q
    ||||| |||| |||||| ||||||    
T  5126723 actactctctccccctcctcatct 5126746  T

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Target: chr6; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 377
Target Start/End: Original strand, 23127306 - 23127407
Alignment:
Q  276 gttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatac 375  Q
    ||||||| ||||| ||||||| |||||| |||||||||| |||| ||||||| | ||| | |   ||||||| ||||||||||||||||  |||||||||    
T  23127306 gttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatac 23127405  T
Q  376 ta 377  Q
    ||    
T  23127406 ta 23127407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 398
Target Start/End: Original strand, 47985397 - 47985511
Alignment:
Q  284 tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct 383  Q
    ||||| ||||||| || | || |||||||||||||| ||||||| | ||||| |   ||||||||||||||||| ||||||| |||||||||||| ||||    
T  47985397 tatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctct 47985496  T
Q  384 gcccctcttcatctc 398  Q
     |||||| |||||||    
T  47985497 ccccctcctcatctc 47985511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 284 - 398
Target Start/End: Original strand, 48003971 - 48004085
Alignment:
Q  284 tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct 383  Q
    ||||| ||||||| || | || |||||||||||||| ||||||| | ||||| |   ||||||||||||||||| ||||||| |||||||||||| ||||    
T  48003971 tatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactactctct 48004070  T
Q  384 gcccctcttcatctc 398  Q
     |||||| |||||||    
T  48004071 ccccctcctcatctc 48004085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 398
Target Start/End: Original strand, 47994684 - 47994798
Alignment:
Q  284 tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct 383  Q
    ||||| ||||||| || | || |||||||||||||| ||||||| | ||||| |   ||||||||||||||||| | ||||| |||||||||||| ||||    
T  47994684 tatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactctct 47994783  T
Q  384 gcccctcttcatctc 398  Q
     |||||| |||||||    
T  47994784 ccccctcctcatctc 47994798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 284 - 398
Target Start/End: Original strand, 48013256 - 48013370
Alignment:
Q  284 tatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgatactaccctct 383  Q
    ||||| ||||||| || | || |||||||||||||| ||||||| | ||||| |   ||||||||||||||||| | ||||| |||||||||||| ||||    
T  48013256 tatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactactctct 48013355  T
Q  384 gcccctcttcatctc 398  Q
     |||||| |||||||    
T  48013356 ccccctcctcatctc 48013370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 274 - 397
Target Start/End: Original strand, 36212915 - 36213038
Alignment:
Q  274 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggacctccactttgttaccaggttctagacttgat 373  Q
    ||||||||| || | ||||||||| | ||||||||||||||||||||  ||||| | ||||| |   ||||||| ||| | ||||||||||| |||||||    
T  36212915 tggttcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgat 36213014  T
Q  374 actaccctctgcccctcttcatct 397  Q
    ||||  ||||||||||| ||||||    
T  36213015 actaatctctgcccctcctcatct 36213038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 217
Target Start/End: Original strand, 15691061 - 15691102
Alignment:
Q  176 ctctctttctttctctctttacatcaaagttcatcttctcaa 217  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  15691061 ctctctttctttctctcttttcaccaaagttcatcttctcaa 15691102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 324
Target Start/End: Original strand, 7884149 - 7884199
Alignment:
Q  274 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcatt 324  Q
    ||||||||| || || |||||||||||||| |||||||||||||| |||||    
T  7884149 tggttcatcatagacaagataaattgttgttttcttcacaatgaattcatt 7884199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 378
Target Start/End: Complemental strand, 25569074 - 25569037
Alignment:
Q  341 acctccactttgttaccaggttctagacttgatactac 378  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  25569074 acctccactttgtttccaggttctatacttgatactac 25569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 373
Target Start/End: Original strand, 6544239 - 6544271
Alignment:
Q  341 acctccactttgttaccaggttctagacttgat 373  Q
    ||||||||||||||||||||||||||| |||||    
T  6544239 acctccactttgttaccaggttctagatttgat 6544271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 373
Target Start/End: Original strand, 6620328 - 6620360
Alignment:
Q  341 acctccactttgttaccaggttctagacttgat 373  Q
    ||||||||| |||||||||||||||||||||||    
T  6620328 acctccactgtgttaccaggttctagacttgat 6620360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 6729650 - 6729618
Alignment:
Q  341 acctccactttgttaccaggttctagacttgat 373  Q
    ||||||||||||||||||||||||||| |||||    
T  6729650 acctccactttgttaccaggttctagatttgat 6729618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 276 - 312
Target Start/End: Complemental strand, 25569142 - 25569106
Alignment:
Q  276 gttcatcgtatacgagataaattgttgtcttcttcac 312  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  25569142 gttcatcgtatacgagataaactgttgtattcttcac 25569106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 373
Target Start/End: Complemental strand, 8042 - 8010
Alignment:
Q  341 acctccactttgttaccaggttctagacttgat 373  Q
    ||||||||| |||||||||||||||||||||||    
T  8042 acctccactgtgttaccaggttctagacttgat 8010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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