View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4038_low_2 (Length: 808)
Name: NF4038_low_2
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 566; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 566; E-Value: 0
Query Start/End: Original strand, 17 - 767
Target Start/End: Original strand, 2838291 - 2839041
Alignment:
| Q |
17 |
actaaccacgagcctagcgaagttctgggttttcacactataacccagcagggtcagcaagtgaagcagatccaggtacagtggcagcacttttagacta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838291 |
actaaccacgagcctagcgaagttctgggttttcacactataacccagcagggtcagcaagtgaagcagatccaggtacagtggcagcacttttagacta |
2838390 |
T |
|
| Q |
117 |
attgaattcctgtttttagtcttccgggaccaattagaaacccaaagtatttgtttcaccaaatcgctttgcagccaccgggagtggtctagggagtagg |
216 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2838391 |
attgaattcctgtttttagtcttccaggaccaattagaaacccaaagtatttgtttcaacaaatcgctttgcagcccccgggagtggtctagggagtagg |
2838490 |
T |
|
| Q |
217 |
gaccttctttcaacagacacaataaatgagcgagatttgagacttggcttccataaaacttaggcacaggaatatcaaggttggggcatatccgacagaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2838491 |
gaccttctttcaacagacacaataaatgagcgagatttgagacttggtttccataaaacttaggcacaggaatatcaaggttggggcatatccgacagaa |
2838590 |
T |
|
| Q |
317 |
tgatggtagcgaatttccactttcataattaacgttatcccaatcagccgatcgattctgataaatcaagagctcttctcaacgggtatagcatgtagca |
416 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||| |||| ||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
2838591 |
tgatggtagcgaatttccactttcattattaacgtcatccaaattagccgatcgatcctgacaaatcaagatctcttctcaacgagtatagcatgtagca |
2838690 |
T |
|
| Q |
417 |
ttgaatgaatcgttaatattttcaatctttgcagaaactgttatggcatgaaattgctgtagattaaatttaatgtcatatcatactat---tgtgaaga |
513 |
Q |
| |
|
||||| ||||| |||||||| |||||||||||||| || |||||| |||||||| ||||||||| |||||||| ||||||||| || |||||||| |
|
|
| T |
2838691 |
ttgaacgaatcattaatattctcaatctttgcagatacagttatgaaatgaaattcctgtagatt---tttaatgtgatatcataccatgtatgtgaaga |
2838787 |
T |
|
| Q |
514 |
gcacaagcataaagttaagaatcttcatctgcgactaaaatcgacatcacattgcatagaataacttttcaagtaagtgcagacgtaaaaagtcaattca |
613 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
2838788 |
ccacaggcatagagttaagaatcttcatctgcggctaaaatcgacatcacattgcatacaataacttttaaagtaagtgcagacctaaaaagtcaattca |
2838887 |
T |
|
| Q |
614 |
aacaaattctgaaaagtttattaggagtccatttgttgtttcaataacctacagcattaaaacagaatttaagttaaaattttgtttccatgagagctat |
713 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |||| |
|
|
| T |
2838888 |
aacaaattctgaaaagtttgttatgagtccatttgttgtttcaataacctacagcaagaaaacagaattcaagttaaaattttgtctccatgagaactat |
2838987 |
T |
|
| Q |
714 |
atatcaatcaatagaaatgtatgaaggaaaaaccccagagtcctccatgcaagc |
767 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| || |||||||||||||||| |
|
|
| T |
2838988 |
atatcaatcaatagaaacgtatgaacgaaaaacctcacagtcctccatgcaagc |
2839041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 344 - 767
Target Start/End: Complemental strand, 2374728 - 2374307
Alignment:
| Q |
344 |
attaacgttatcccaatcagccgatcgattctgataaatcaagagctcttctcaacgggtatagcatgtagcattgaatgaatcgttaatattttcaatc |
443 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||| ||| | || ||||||||||||||||||||||||||||||||||||||| |||||||| ||| || |
|
|
| T |
2374728 |
attaacgttatcccaattagccaatcgatcgtgacaaagtacgatctcttctcaacgggtatagcatgtagcattgaatgaatcattaatattctcagtc |
2374629 |
T |
|
| Q |
444 |
tttgcagaaactgttatggcatgaaattgctgtagattaaatttaatgtcatatcatactat---tgtgaagagcacaagcataaagttaagaatcttca |
540 |
Q |
| |
|
||| | || || ||||||||||| |||||||||||||| || ||||||||| || ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
2374628 |
tttacggatacagttatggcatg---------tagattaaatttaaagtgatatcataccatgtatgtgaaggccacaagcatagagttaagaatcttca |
2374538 |
T |
|
| Q |
541 |
tctgcgactaaaatcgacatcacattgcatagaataacttttcaagtaagtgcagacgtaaaaagtcaattcaaacaaattctgaaaagtttattaggag |
640 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
2374537 |
tctgcgagtaaaatccacatcatattgcatagaataacttttcaagtaagtgcagacctaaaaagtcaattcaaagaaattctgaaaagtttgttatgag |
2374438 |
T |
|
| Q |
641 |
tccat----ttgttgtttcaataacctacagcattaaaacagaatttaagttaaaattttgtttccatgagagctatatatcaatcaatagaaatgtatg |
736 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2374437 |
tccatccatttgttgtttcaataacctacagcatgaaaacagaattcaagttaaaattttgcctccatgagaactatatatcaatcaatagaaatgtatg |
2374338 |
T |
|
| Q |
737 |
aaggaaaaaccccagagtcctccatgcaagc |
767 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
2374337 |
aaggaaaaacctcagagtcctccatgcaagc |
2374307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 344 - 767
Target Start/End: Original strand, 2381343 - 2381764
Alignment:
| Q |
344 |
attaacgttatcccaatcagccgatcgattctgataaatcaagagctcttctcaacgggtatagcatgtagcattgaatgaatcgttaatattttcaatc |
443 |
Q |
| |
|
||||||||||||||||| |||| |||||| ||| ||| | || ||||||||||||||||||||||||||||||||||||||| |||||||| ||| || |
|
|
| T |
2381343 |
attaacgttatcccaattagccaatcgatcgtgacaaagtacgatctcttctcaacgggtatagcatgtagcattgaatgaatcattaatattctcagtc |
2381442 |
T |
|
| Q |
444 |
tttgcagaaactgttatggcatgaaattgctgtagattaaatttaatgtcatatcatactat---tgtgaagagcacaagcataaagttaagaatcttca |
540 |
Q |
| |
|
||| | || || ||||||||||| |||||||||||||| || ||||||||| || ||||||| |||||||||| ||||||||||||||| |
|
|
| T |
2381443 |
tttacggatacagttatggcatg---------tagattaaatttaaagtgatatcataccatgtatgtgaaggccacaagcatagagttaagaatcttca |
2381533 |
T |
|
| Q |
541 |
tctgcgactaaaatcgacatcacattgcatagaataacttttcaagtaagtgcagacgtaaaaagtcaattcaaacaaattctgaaaagtttattaggag |
640 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||| |
|
|
| T |
2381534 |
tctgcgagtaaaatccacatcatattgcatagaataacttttcaagtaagtgcagacctaaaaagtcaattcaaagaaattctgaaaagtttgttatgag |
2381633 |
T |
|
| Q |
641 |
tcca----tttgttgtttcaataacctacagcattaaaacagaatttaagttaaaattttgtttccatgagagctatatatcaatcaatagaaatgtatg |
736 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
2381634 |
tccatccatttgttgtttcaataacctacagcatgaaaacagaattcaagttaaaattttgcctccatgagaactatatatcaatcaatagaaatgtatg |
2381733 |
T |
|
| Q |
737 |
aaggaaaaaccccagagtcctccatgcaagc |
767 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |
|
|
| T |
2381734 |
aaggaaaaacctcagagtcctccatgcaagc |
2381764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 35 - 328
Target Start/End: Complemental strand, 2375098 - 2374800
Alignment:
| Q |
35 |
gaagttctgggttttcacactataacccagcagggtcagcaagtgaagcagatccaggtacagtggcagcacttttagactaattgaattcctgttttta |
134 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| || ||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
2375098 |
gaagttctgggttttcacactataacctagcagggttagcaaatggagcagatcccggtacagtggcagcacttatagactaattgaactcccgttttta |
2374999 |
T |
|
| Q |
135 |
gtcttccgggaccaattagaaacccaaagtatttgtttcaccaaatcgctttgcagccaccgggagtggtctagggagtagggaccttctttcaacag-- |
232 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||| |||||| || || |||| || |||||| | ||||||||||||||||||||||||||| |
|
|
| T |
2374998 |
gtcctccggaaccaattagaaacccaaagtatttgtttcaacaaatctctctgaagcccccaggagtgatatagggagtagggaccttctttcaacagaa |
2374899 |
T |
|
| Q |
233 |
acacaataaatgagcgagat---ttgagacttggcttccataaaacttaggcacaggaatatcaaggttggggcatatccgacagaatgatggtagcga |
328 |
Q |
| |
|
| | ||||| |||||||||| ||||||||||||||| |||||||||||| | ||||||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
2374898 |
aaaaaataagtgagcgagataagttgagacttggcttcagacaaacttaggcacgcagaaatcaaggttggggtatatccaacagagtgatggtagcga |
2374800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 35 - 328
Target Start/End: Original strand, 2380973 - 2381271
Alignment:
| Q |
35 |
gaagttctgggttttcacactataacccagcagggtcagcaagtgaagcagatccaggtacagtggcagcacttttagactaattgaattcctgttttta |
134 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| || ||||||||| |||||||||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
2380973 |
gaagttctgggttttcacactataacctagcagggttagcaaatggagcagatcccggtacagtggcagcacttatagactaattgaactcccgttttta |
2381072 |
T |
|
| Q |
135 |
gtcttccgggaccaattagaaacccaaagtatttgtttcaccaaatcgctttgcagccaccgggagtggtctagggagtagggaccttctttcaacag-- |
232 |
Q |
| |
|
||| ||||| |||||||||||||||||||||||||||||| |||||| || || |||| || |||||| | ||||||||||||||||||||||||||| |
|
|
| T |
2381073 |
gtcctccggaaccaattagaaacccaaagtatttgtttcaacaaatctctctgaagcccccaggagtgatatagggagtagggaccttctttcaacagaa |
2381172 |
T |
|
| Q |
233 |
acacaataaatgagcgagat---ttgagacttggcttccataaaacttaggcacaggaatatcaaggttggggcatatccgacagaatgatggtagcga |
328 |
Q |
| |
|
| | ||||| |||||||||| ||||||||||||||| |||||||||||| | ||||||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
2381173 |
aaaaaataagtgagcgagataagttgagacttggcttcagacaaacttaggcacgcagaaatcaaggttggggtatatccaacagagtgatggtagcga |
2381271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 530 - 615
Target Start/End: Original strand, 1376118 - 1376203
Alignment:
| Q |
530 |
aagaatcttcatctgcgactaaaatcgacatcacattgcatagaataacttttcaagtaagtgcagacgtaaaaagtcaattcaaa |
615 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| | || |||||||||||||| |
|
|
| T |
1376118 |
aagaatcttcatctgcaactaaaatccctatcacattgcatagaataacttttcaaagaagtgcattcctacaaagtcaattcaaa |
1376203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 1083583 - 1083647
Alignment:
| Q |
26 |
gagcctagcgaagttctgggttttcacactataacccagcagggt---cagcaagtgaagcagat |
87 |
Q |
| |
|
|||||||| | |||||||||||||| ||||||| ||||||||||| |||||||||| |||||| |
|
|
| T |
1083583 |
gagcctagtgcagttctgggttttcgcactatagcccagcagggttagcagcaagtgaggcagat |
1083647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 463 - 497
Target Start/End: Complemental strand, 1164761 - 1164727
Alignment:
| Q |
463 |
catgaaattgctgtagattaaatttaatgtcatat |
497 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1164761 |
catgaaattgctgcagattaaatttaatgtcatat |
1164727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 215; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 329 - 752
Target Start/End: Original strand, 1525144 - 1525584
Alignment:
| Q |
329 |
atttccactttcataattaacgttatcccaatcagccgatcgattctgataaatcaagagctcttctcaacgggtatagcatgtagcattgaatgaatcg |
428 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||| || ||| | | |||||| || |||||||||| ||| ||||||||||||| |||||| |||| |
|
|
| T |
1525144 |
atttccacattcattattaacgttatcccaatgagcagacggatatttacaaatcatgatctcttctcaaagggcatagcatgtagcactgaatggatcg |
1525243 |
T |
|
| Q |
429 |
ttaatattttcaatctttgcagaaactgttatggcatgaaattgctgtagattaaatttaatgtcatatcatactat---tgtgaagagcacaagcataa |
525 |
Q |
| |
|
||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||||||||| ||||||||| || |||||||| || ||||||| |
|
|
| T |
1525244 |
ttaatatcctcaatctttgcagagacagttctggcatgaaattgctgtagattaaatttaatgtgatatcataccatgtatgtgaagaccagaagcatag |
1525343 |
T |
|
| Q |
526 |
agttaagaatcttcatctgcgactaaaatcgacatcacattgcatagaataacttttcaagtaagtgcagacgtaaaaagtcaattcaaacaaattctg- |
624 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1525344 |
agttaagaatcttcatctgtgactaaaatccacatcacattgcatagaataacttttcaagtaagtgcagacctaaaaagtcaattcaaacaaattctga |
1525443 |
T |
|
| Q |
625 |
aaaagtttattaggagtccatttgttgtttcaataacctacagcattaaaacagaat-------------ttaagttaaaattttgtttccatgagagct |
711 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| ||||||||||||| ||||||||| | |||||||| || ||| ||||||||| || |
|
|
| T |
1525444 |
aaaagtttcttatgagtccatttgttgtttcagtaacctacagcatggaaacagaatatggaaacagaactcaagttaaagttgtgtctccatgagaact |
1525543 |
T |
|
| Q |
712 |
atatatcaatcaatagaaatgtatgaaggaaaaaccccaga |
752 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1525544 |
atatatcaatcaatagaaatgtatgaaggaaaaacctcaga |
1525584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 643 - 752
Target Start/End: Original strand, 1523024 - 1523133
Alignment:
| Q |
643 |
catttgttgtttcaataacctacagcattaaaacagaatttaagttaaaattttgtttccatgagagctatatatcaatcaatagaaatgtatgaaggaa |
742 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||| |||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1523024 |
catttgttgtttcagtaacctacagcatgaaaacagaattcaagttaaagtttggtctccatgagaactatatatcaatcaatagaaatgtatgaaggaa |
1523123 |
T |
|
| Q |
743 |
aaaccccaga |
752 |
Q |
| |
|
||||| |||| |
|
|
| T |
1523124 |
aaacctcaga |
1523133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 39 - 187
Target Start/End: Original strand, 1523582 - 1523737
Alignment:
| Q |
39 |
ttctgggttttcacactataacccagcagggtcagcaagtgaagcagatcc-------agg-tacagtggcagcacttttagactaattgaattcctgtt |
130 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||||||||| ||||||||||||||||||| |||| || |
|
|
| T |
1523582 |
ttctgggttttcgcactataacccagcagggtcagcaagtgaggcagatcctatttttagactacagtggcaacacttttagactaattgaactcctatt |
1523681 |
T |
|
| Q |
131 |
tttagtcttccgggaccaattagaaacccaaagtatttgtttcaccaaatcgctttg |
187 |
Q |
| |
|
||||||||||||||| |||||||||||| ||| |||||||||| |||||| ||||| |
|
|
| T |
1523682 |
tttagtcttccgggagcaattagaaacctgaag-atttgtttcaacaaatccctttg |
1523737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 255 - 328
Target Start/End: Original strand, 1524143 - 1524216
Alignment:
| Q |
255 |
gagacttggcttccataaaacttaggcacaggaatatcaaggttggggcatatccgacagaatgatggtagcga |
328 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||| |||||||| ||| || ||||| ||||| |
|
|
| T |
1524143 |
gagacttggcttccaaaaaacttaggcacaggaaaatcaaggttggagcatatccaacataacgatggcagcga |
1524216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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