View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4038_low_21 (Length: 329)

Name: NF4038_low_21
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4038_low_21
NF4038_low_21
[»] chr3 (3 HSPs)
chr3 (156-316)||(46443024-46443186)
chr3 (67-114)||(46444031-46444078)
chr3 (1-44)||(46444085-46444128)
[»] scaffold0332 (1 HSPs)
scaffold0332 (69-125)||(14771-14828)
[»] chr8 (2 HSPs)
chr8 (76-125)||(34102711-34102761)
chr8 (76-125)||(4326238-4326288)
[»] chr6 (2 HSPs)
chr6 (76-125)||(10054392-10054442)
chr6 (76-125)||(30533991-30534041)
[»] chr1 (1 HSPs)
chr1 (76-125)||(51409732-51409782)
[»] chr2 (1 HSPs)
chr2 (76-125)||(2757096-2757144)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 156 - 316
Target Start/End: Complemental strand, 46443186 - 46443024
Alignment:
Q  156 accccttagttgttatatacttttcaccc--tcccttaccttttattctcgccaaaaaactcaacaactgaaaaagagaagaagaaactcagccacccag 253  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46443186 accccttagttgttatatacttttcacccattcccttaccttttattctcgccaaaaaactcaacaactgaaaaagagaagaagaaactcagccacccag 46443087  T
Q  254 accagcggcaccgccgccgcgaacctcccactctctctcctgtggcggcaacacttcatctct 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  46443086 accagcggcaccgccgccgcgaacctcccactctctctcctgtggcggcaatacttcatctct 46443024  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 114
Target Start/End: Complemental strand, 46444078 - 46444031
Alignment:
Q  67 aacttatataaataaataagttttatgtactattcattagtttttaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46444078 aacttatataaataaataagttttatgtactattcattagtttttaaa 46444031  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 46444128 - 46444085
Alignment:
Q  1 tcattcaagtcattattgagcaaatgaatttactacttgaagtc 44  Q
    |||||||||||||||||| |||||||| |||||| |||||||||    
T  46444128 tcattcaagtcattattgggcaaatgagtttactgcttgaagtc 46444085  T

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Target: scaffold0332 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 125
Target Start/End: Complemental strand, 14828 - 14771
Alignment:
Q  69 cttatataaataaataag-ttttatgtactattcattagtttttaaatgtagtttatg 125  Q
    |||||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  14828 cttatacaaataaataagcttttatgtattattcataagtttttaaatgtagtttatg 14771  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 34102761 - 34102711
Alignment:
Q  76 aaataaataag-ttttatgtactattcattagtttttaaatgtagtttatg 125  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||||||||||    
T  34102761 aaataaataagcttttatgtattattcatgagtttttaaatgtagtttatg 34102711  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 4326288 - 4326238
Alignment:
Q  76 aaataaataagt-tttatgtactattcattagtttttaaatgtagtttatg 125  Q
    |||||||||||| |||||||| ||||||| ||||| |||||||||||||||    
T  4326288 aaataaataagtctttatgtattattcataagtttataaatgtagtttatg 4326238  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 10054392 - 10054442
Alignment:
Q  76 aaataaataag-ttttatgtactattcattagtttttaaatgtagtttatg 125  Q
    ||||||||||| ||||||||| ||||||| ||||| |||||||||||||||    
T  10054392 aaataaataagcttttatgtattattcataagtttgtaaatgtagtttatg 10054442  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 30533991 - 30534041
Alignment:
Q  76 aaataaataag-ttttatgtactattcattagtttttaaatgtagtttatg 125  Q
    ||||||||||| ||||||||| ||||||| ||||| |||||||||||||||    
T  30533991 aaataaataagcttttatgtattattcataagtttgtaaatgtagtttatg 30534041  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 51409782 - 51409732
Alignment:
Q  76 aaataaataagttt-tatgtactattcattagtttttaaatgtagtttatg 125  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||||||||    
T  51409782 aaataaataagtttgtatgtattattcataagtttgtaaatgtagtttatg 51409732  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 2757144 - 2757096
Alignment:
Q  76 aaataaataagttttatgtactattcattagtttttaaatgtagtttatg 125  Q
    |||||||||||||||||||| |||| || |||||||||| ||||||||||    
T  2757144 aaataaataagttttatgtattatttataagtttttaaa-gtagtttatg 2757096  T

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