View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_26 (Length: 296)
Name: NF4038_low_26
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 8990459 - 8990629
Alignment:
| Q |
54 |
ctagatattgattgtcatgtggtgagggagaaacttcaaagtggactcatggaattgttccccatctccaatcaagagcagattatagatatcttgacaa |
153 |
Q |
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| T |
8990459 |
ctagatattgattgccatgtagtgagggagaaacttcaaagtggactcatggaattgtttcctatctctagtcaagagcagattgcagatatcttgacaa |
8990558 |
T |
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| Q |
154 |
aggcactgcatccggcaagtttcaataatttggttgccaagctaagtctgctcaacatataccagccttag |
224 |
Q |
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|||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8990559 |
aggcgctgcatccggcaagtttcaatcatttgattgccaagctaagtctgctcaacatataccagccttag |
8990629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 9014906 - 9015076
Alignment:
| Q |
54 |
ctagatattgattgtcatgtggtgagggagaaacttcaaagtggactcatggaattgttccccatctccaatcaagagcagattatagatatcttgacaa |
153 |
Q |
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| T |
9014906 |
ctagatattgattgccatgtagtgagggagaaacttcaaagtggactcatggaattgtttcctatctctagtcaagagcagattgcagatatcttgacaa |
9015005 |
T |
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| Q |
154 |
aggcactgcatccggcaagtttcaataatttggttgccaagctaagtctgctcaacatataccagccttag |
224 |
Q |
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|||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
9015006 |
aggcgctgcatccggcaagtttcaatcatttgattgccaagctaagtctgctcaacatataccagccttag |
9015076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 54 - 224
Target Start/End: Original strand, 14720262 - 14720433
Alignment:
| Q |
54 |
ctagatattgattgtca-tgtggtgagggagaaacttcaaagtggactcatggaattgttccccatctccaatcaagagcagattatagatatcttgaca |
152 |
Q |
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| T |
14720262 |
ctagatattgattgccaatgtagtgagggagaaacttcaaagtggactcatggaattgtttcctatctctagtcaagagcagattgcagatatcttgaca |
14720361 |
T |
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| Q |
153 |
aaggcactgcatccggcaagtttcaataatttggttgccaagctaagtctgctcaacatataccagccttag |
224 |
Q |
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||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
14720362 |
aaggcgctgcatccggcaagtttcaatcatttgattgccaagctaagtctgctcaacatataccagccttag |
14720433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 8984640 - 8984687
Alignment:
| Q |
228 |
taagtagttagttacaataggattagtcaattagttacacaactaagc |
275 |
Q |
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| T |
8984640 |
taagtagttggttacaataggattagtgaattagttacacaactaagc |
8984687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 8990669 - 8990716
Alignment:
| Q |
228 |
taagtagttagttacaataggattagtcaattagttacacaactaagc |
275 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
8990669 |
taagtagttggttacaataggattagtgaattagttacacaactaagc |
8990716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 9015116 - 9015163
Alignment:
| Q |
228 |
taagtagttagttacaataggattagtcaattagttacacaactaagc |
275 |
Q |
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| T |
9015116 |
taagtagttggttacaataggattagtgaattagttacacaactaagc |
9015163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 14715917 - 14715964
Alignment:
| Q |
228 |
taagtagttagttacaataggattagtcaattagttacacaactaagc |
275 |
Q |
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| T |
14715917 |
taagtagttggttacaataggattagtgaattagttacacaactaagc |
14715964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 228 - 275
Target Start/End: Original strand, 14720473 - 14720520
Alignment:
| Q |
228 |
taagtagttagttacaataggattagtcaattagttacacaactaagc |
275 |
Q |
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||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
14720473 |
taagtagttggttacaataggattagtgaattagttacacaactaagc |
14720520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 14996612 - 14996524
Alignment:
| Q |
5 |
gtacataagttaacgnnnnnnngagagaaactaacagagaggacaaaaactagatattgattgtcatgtggtgagggagaaacttcaaa |
93 |
Q |
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| T |
14996612 |
gtacataagttaacgtttttttgagagaaactaacagagaggacaaaaactagatgttgattgtaatgtggtgagggagaaacttcaaa |
14996524 |
T |
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