View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_3 (Length: 589)
Name: NF4038_low_3
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 378
Target Start/End: Original strand, 54395263 - 54395638
Alignment:
| Q |
1 |
cagagagtttagtagtggatgcagagatgttgttggaaagcatagagaagctacataactgattaaagcacatatatgaggttagtcgtgcgttgtagaa |
100 |
Q |
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| T |
54395263 |
cagagagtttagtagtggatgcagagatgttgttggaaagcatagagaagctacataactgattaatgcacatatatgaggttagtcgtgcgttgtagaa |
54395362 |
T |
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| Q |
101 |
ttttgaactgattttgtatgtgcgcaatggtggcatatgtaacattgaaattagtgagaatcatcttgattgagtgatggataggtatacttctttgtag |
200 |
Q |
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| T |
54395363 |
ttttgaactgattttgtatgtgcgcaatggtggcatatgtaacattgaaattagtgagaatcatcttgattgagtgatggataggtatacttctttgtag |
54395462 |
T |
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| Q |
201 |
tgtgctaaggttaatgccacggcactcattggtgtagctgctttattgaactattgatgctcagtactcttagctcaatacatattatgttatctttaga |
300 |
Q |
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| T |
54395463 |
tgtgctaaggttaatgccacggcactcattggtgtagctgctttattgaaccattgatgctcagtactcttagctcaatacattgtatgttatctttag- |
54395561 |
T |
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| Q |
301 |
tatttgttttaattttgctaatacattgggtttttgaaaccaaaagaaatctctatatgtttgatatggtttatttga |
378 |
Q |
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| T |
54395562 |
-atttgttttaattttgctaatacattgggtttttgaaaccaaaagaaatctctatatgtttgatatggtttatttga |
54395638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 402 - 573
Target Start/End: Original strand, 54395658 - 54395829
Alignment:
| Q |
402 |
gtcacacattggtacagaataagatacaacgtgcgactagattgcaagttcaaattaaataagtgactatatacatcaatttaactcccaataatagaat |
501 |
Q |
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| T |
54395658 |
gtcacacattggtactgaaaaagatacaacgtgcgactagattgcgagttcaaattaaataagtgactatatacatcaatttaactcccaataataaaat |
54395757 |
T |
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| Q |
502 |
atggcaccagattagtcttttgataatctcatggtctatatagaaattattataatgtcatcttcatgattg |
573 |
Q |
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| T |
54395758 |
atggcaccagattagtcttttgataatctcatggtctatatagaaattattataatgtcatcttcatgattg |
54395829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 513 - 573
Target Start/End: Original strand, 54380924 - 54380987
Alignment:
| Q |
513 |
ttagtcttttgataatctcatggtctatatagaaattatta---taatgtcatcttcatgattg |
573 |
Q |
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| T |
54380924 |
ttagtctttcaataatctcatggtctatatagagattattattttaatgtcattttcatgattg |
54380987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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