View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4038_low_31 (Length: 279)

Name: NF4038_low_31
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4038_low_31
NF4038_low_31
[»] chr4 (2 HSPs)
chr4 (1-208)||(7457233-7457440)
chr4 (12-70)||(7411292-7411350)
[»] scaffold0496 (1 HSPs)
scaffold0496 (12-70)||(2220-2278)
[»] scaffold1330 (1 HSPs)
scaffold1330 (12-70)||(1022-1080)
[»] scaffold0345 (1 HSPs)
scaffold0345 (12-70)||(4298-4356)
[»] scaffold0105 (5 HSPs)
scaffold0105 (12-70)||(4411-4469)
scaffold0105 (12-70)||(10493-10551)
scaffold0105 (12-70)||(11766-11824)
scaffold0105 (12-70)||(34623-34681)
scaffold0105 (12-70)||(48223-48281)


Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 7457440 - 7457233
Alignment:
Q  1 cagaaattaagccataatcggaccttgacaattgaagaagacaatggattgatatatcccgaccaagatgttgaaaaagcaaactcgagtcatgtgtcat 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7457440 cagaaattaagccataatcagaccttgacaattgaagaagacaatggattgatatatcccgaccaagatgttgaaaaagcaaactcgagtcatgtgtcat 7457341  T
Q  101 atcttcttgccttttacaatccctattgtctttggaatgggaaaaaatggcaaactcttgctcctccacttccttattcgtcttctcttccttgggacat 200  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7457340 atcttcttgccttttacaatccctatcgtctttggaatgggaaaaaatggcaaactcttgctcctccgcttccttattcgtcttctcttccttgggacat 7457241  T
Q  201 tctgcttg 208  Q
    ||||||||    
T  7457240 tctgcttg 7457233  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 7411350 - 7411292
Alignment:
Q  12 ccataatcggaccttgacaattgaagaagacaatggattgatatatcccgaccaagatg 70  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  7411350 ccataatcagatcttgacaattgaagaagacaatggattgatatatctcgaccgagatg 7411292  T

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Target: scaffold0496 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 2278 - 2220
Alignment:
Q  12 ccataatcggaccttgacaattgaagaagacaatggattgatatatcccgaccaagatg 70  Q
    |||||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||    
T  2278 ccataatcagatcttgacaattgaagaagacaatggattgatatatctcgaccgagatg 2220  T

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Target: scaffold1330 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1330
Description:

Target: scaffold1330; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 1080 - 1022
Alignment:
Q  12 ccataatcggaccttgacaattgaagaagacaatggattgatatatcccgaccaagatg 70  Q
    |||||||| || ||||||||  ||||||||||||||||||||||||| ||||| |||||    
T  1080 ccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgaccgagatg 1022  T

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Target: scaffold0345 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 4298 - 4356
Alignment:
Q  12 ccataatcggaccttgacaattgaagaagacaatggattgatatatcccgaccaagatg 70  Q
    |||||||| || ||||||||  ||||||||||||||||||||||||| ||||| |||||    
T  4298 ccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgaccgagatg 4356  T

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Target: scaffold0105 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 4411 - 4469
Alignment:
Q  12 ccataatcggaccttgacaattgaagaagacaatggattgatatatcccgaccaagatg 70  Q
    |||||||| || ||||||||  ||||||||||||||||||||||||| ||||| |||||    
T  4411 ccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgaccgagatg 4469  T

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Target: scaffold0105; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 10493 - 10551
Alignment:
Q  12 ccataatcggaccttgacaattgaagaagacaatggattgatatatcccgaccaagatg 70  Q
    |||||||| || ||||||||  ||||||||||||||||||||||||| ||||| |||||    
T  10493 ccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgaccgagatg 10551  T

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Target: scaffold0105; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 11766 - 11824
Alignment:
Q  12 ccataatcggaccttgacaattgaagaagacaatggattgatatatcccgaccaagatg 70  Q
    |||||||| || ||||||||  ||||||||||||||||||||||||| ||||| |||||    
T  11766 ccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgaccgagatg 11824  T

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Target: scaffold0105; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 34681 - 34623
Alignment:
Q  12 ccataatcggaccttgacaattgaagaagacaatggattgatatatcccgaccaagatg 70  Q
    |||||||| || ||||||||  ||||||||||||||||||||||||| ||||| |||||    
T  34681 ccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgaccgagatg 34623  T

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Target: scaffold0105; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 48281 - 48223
Alignment:
Q  12 ccataatcggaccttgacaattgaagaagacaatggattgatatatcccgaccaagatg 70  Q
    |||||||| || ||||||||  ||||||||||||||||||||||||| ||||| |||||    
T  48281 ccataatcagatcttgacaaccgaagaagacaatggattgatatatctcgaccgagatg 48223  T

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