View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_32 (Length: 266)
Name: NF4038_low_32
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 14134282 - 14134036
Alignment:
| Q |
18 |
atagaaaaattaatgttgagcaatttataagtgagaggatacacaaatcgaataccttaagatttgtgatnnnnnnntatttaataacatattctcttta |
117 |
Q |
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| T |
14134282 |
atagaaaaattaatgttgagcaatttataagtgagaggatacacaaatcgaataccttaagatttgtgataaagaaatatttaataacatattctcttta |
14134183 |
T |
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| Q |
118 |
tt--------------aaatttgattcaaagagaaatttggacctaatagaaaattcaaacgatattctaaactcatccatgcatttatcaggttaaatg |
203 |
Q |
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| T |
14134182 |
cttggttgcttatgccaaatttgattcaaagagaaatttggacctaatagaaaattcaaacgatattctaaactcatccatgcatttatcaggttaaatg |
14134083 |
T |
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| Q |
204 |
actgaacaaattaacattctaatttatttaatagtctttccgttcat |
250 |
Q |
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| T |
14134082 |
actaaacaaattaacattctaatttatttaatagtttttccgttcat |
14134036 |
T |
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