View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_37 (Length: 251)
Name: NF4038_low_37
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 41043691 - 41043421
Alignment:
| Q |
1 |
cctcggctgctgctgccaaggacgctttcatatactgcatgacaaacaagacattttagctaaaatatattttgaaattatgtttttgagatat-catgt |
99 |
Q |
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| T |
41043691 |
cctcggctgctgctgccaaggatgctttcatatactgcatgacaaacaagacattttagctaaaatatattttgaaattatgtttttgagatatccatgt |
41043592 |
T |
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| Q |
100 |
catcccaaagaccatgattatgaa----------------------acaattcacaaaaacagtttaaattaatgg-nnnnnnncataccttgtcataac |
176 |
Q |
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| T |
41043591 |
catcccaaagaccatgattatgaaacatcactgaaataataagtgcacaattcacaaaaacagtttaaattaatggttttttttcataccttgtcataac |
41043492 |
T |
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| Q |
177 |
attggaattctccaattccaggaaacctccaagttccattgctttctggatatgatggatatctctgctcc |
247 |
Q |
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| T |
41043491 |
attggaattctccaattccaggaaacctccaagttccattgctttctggatatgatggatatctcagctcc |
41043421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 4363931 - 4364009
Alignment:
| Q |
163 |
taccttgtcataacattggaattctccaattccaggaaacctccaagttccattgctttctggatatgatggatatctc |
241 |
Q |
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| T |
4363931 |
taccttgtcatagcactggaattctccaattcctggaaacttccaagttccatcagtttcagggtatgatggatatctc |
4364009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 4371600 - 4371678
Alignment:
| Q |
163 |
taccttgtcataacattggaattctccaattccaggaaacctccaagttccattgctttctggatatgatggatatctc |
241 |
Q |
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|||||||||||| |||||||||||||||||||| |||||| |||||||||||| |||| || || |||||||||||| |
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| T |
4371600 |
taccttgtcatagcattggaattctccaattcctggaaacttccaagttccatcagtttcagggtaagatggatatctc |
4371678 |
T |
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