View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_39 (Length: 250)
Name: NF4038_low_39
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 533202 - 532963
Alignment:
| Q |
1 |
tcggaacaaggattgctttcttccacaaaatcaacaacggctgctgcaccaaacttctatttacccgacgagtgttgggaatctgtcttcaaattcgtca |
100 |
Q |
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| T |
533202 |
tcggaacaaggattgctttcttccacaaaatcaacaacggctgctgcaccaaacttctatttacccgacgagtgttgggaatctgtcttcaaattcgtca |
533103 |
T |
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| Q |
101 |
tcgacaaggacaacacaacagggagtccaaccgtagctactttccatcgccaatctacattagcttcaaatgtctctccaaggtctccaagcaattcctt |
200 |
Q |
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| T |
533102 |
tcgacaaggacaacacaacagggagtccaaccgtagctactttccatcgccaatctacattagcttcaaatgtctctccaaggtctccaagcaattcctt |
533003 |
T |
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| Q |
201 |
tccatcaccaatcttcttctattatctttcacggtctgtg |
240 |
Q |
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| T |
533002 |
tccatcaccaatcttcttctattatctttcacggtctgtg |
532963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 40 - 102
Target Start/End: Original strand, 1523979 - 1524041
Alignment:
| Q |
40 |
gctgctgcaccaaacttctatttacccgacgagtgttgggaatctgtcttcaaattcgtcatc |
102 |
Q |
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| T |
1523979 |
gctgctgcagcaaaattttacttacctgatgactgttgggaatctgtcttcaaattcgtcatc |
1524041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 1547373 - 1547417
Alignment:
| Q |
58 |
tatttacccgacgagtgttgggaatctgtcttcaaattcgtcatc |
102 |
Q |
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| T |
1547373 |
tatttacctgacgagtgttgggaatctatcttcaaattcatcatc |
1547417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 1546236 - 1546200
Alignment:
| Q |
66 |
cgacgagtgttgggaatctgtcttcaaattcgtcatc |
102 |
Q |
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| T |
1546236 |
cgacgagtgttgggaatttgtcttcaaattcctcatc |
1546200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 2460661 - 2460613
Alignment:
| Q |
165 |
ttcaaatgtctctccaaggtctccaagcaattcctttccatcaccaatc |
213 |
Q |
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| T |
2460661 |
ttcaaatctctctccatggtctccaaacagttcctctccatcaccaatc |
2460613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 41886293 - 41886334
Alignment:
| Q |
55 |
ttctatttacccgacgagtgttgggaatctgtcttcaaattc |
96 |
Q |
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| T |
41886293 |
ttctatttacctgatgagtgttgggaatgtgtcttcaaattc |
41886334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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