View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_44 (Length: 243)
Name: NF4038_low_44
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 1673794 - 1673969
Alignment:
| Q |
1 |
cttggtggttgaattgattgagcttccataattcataacacatattcatcacattcactttctttgccccaagcttggttaccttttccttaaaccaaat |
100 |
Q |
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| T |
1673794 |
cttggtggttgaattgattgagcttc-ataattcataacacatattcatcac-ttcactttctttgccccaagcttggttaccttttccttaaaccaaat |
1673891 |
T |
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| Q |
101 |
acagttgacagcgactaaatatttaatcttgtcatctcatgagtcgtgaccttatcaacttagttatctaccttattaat |
180 |
Q |
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| T |
1673892 |
acagttgacagcgactaaatatttaatcttgtcatctcatgagtcgtgaccttat--acttagttatctaccttattaat |
1673969 |
T |
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Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 1674119 - 1674180
Alignment:
| Q |
181 |
gtattaaaatgaattataaaatcataaatgttataattattactactagattagttcatctc |
242 |
Q |
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| T |
1674119 |
gtattaaaatgaattataaaatcataaatgttataattattactactagattagttcatctc |
1674180 |
T |
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