View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_45 (Length: 242)
Name: NF4038_low_45
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 39821985 - 39821901
Alignment:
| Q |
10 |
gcataggttatgaatatgttaaccaaattagatgggaaactctatagcaccgatatttctgatcgaagatgtatttggtatcatg |
94 |
Q |
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| T |
39821985 |
gcataggttatgaatatgttaaccaaattagatgggaaactctattgcaccgatatttctgatcgaagatgtatttggtatcatg |
39821901 |
T |
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Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 39821828 - 39821768
Alignment:
| Q |
168 |
tttgtctatgtgaatgcttctggagggttggaaattaaaataagcacacaagagatgaact |
228 |
Q |
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| T |
39821828 |
tttgtctatgtgaatgcttctggagggttggaaattaaaataagcacacaagggatgaact |
39821768 |
T |
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