View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_47 (Length: 237)
Name: NF4038_low_47
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 5677619 - 5677841
Alignment:
| Q |
1 |
ctatgcatttgctcaccaattttgttttctctgctattggaagaaggctttctgatatatgtaagattgaaacagaacctgcaatggtttttagtgctac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5677619 |
ctatgcatttgctcaccaattttgttttctctgctattggaagaaggctttctgaaatatgtaagattgaaacagaacctgcaatggtttttagtgctac |
5677718 |
T |
|
| Q |
101 |
atcattcaaatatgcatcagttcttgccaccaagttcccaactgaataatcttctgtcatctcaagatattcggccacacatcgaagcatagcgatgttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5677719 |
atcattcaaatatgcatcagttcttgccaccaagttcccaactgaataatcttctgtcatctcaagatattcggccacacatcgaagcatagcgatgttt |
5677818 |
T |
|
| Q |
201 |
tccacatttatctcgaaatttat |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5677819 |
tccacatttatctcgaaatttat |
5677841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39777789 - 39777567
Alignment:
| Q |
1 |
ctatgcatttgctcaccaattttgttttctctgctattggaagaaggctttctgatatatgtaagattgaaacagaacctgcaatggtttttagtgctac |
100 |
Q |
| |
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|||||||| |||| || ||||||| ||||||||| ||||||||||| |||||||| |||||||||| || | | |||| ||| | || ||||| || |
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| T |
39777789 |
ctatgcatctgctaactaattttgctttctctgcaattggaagaagtgtttctgatgtatgtaagatggatattgcccctgacatgctcttgagtgcaac |
39777690 |
T |
|
| Q |
101 |
atcattcaaatatgcatcagttcttgccaccaagttcccaactgaataatcttctgtcatctcaagatattcggccacacatcgaagcatagcgatgttt |
200 |
Q |
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|||||||| || | |||||||||| | ||||| || || || ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||| |
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| T |
39777689 |
ttcattcaagtaagaatcagttcttcctaccaaatttccgaccgaataatcttctgtcatttcaagatactcggctacacatcgaagcatagcgatgttt |
39777590 |
T |
|
| Q |
201 |
tccacatttatctcgaaatttat |
223 |
Q |
| |
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|| || |||| ||||| ||||| |
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| T |
39777589 |
tcgacgcttatttcgaagtttat |
39777567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 202
Target Start/End: Original strand, 47798355 - 47798555
Alignment:
| Q |
2 |
tatgcatttgctcaccaattttgttttctctgctattggaagaaggctttctgatatatgtaagattgaaacagaacctgcaatggtttttagtgctaca |
101 |
Q |
| |
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||||||| |||| || ||||||| ||||| ||| ||||||||||| |||||||| |||||||||| || | | |||| ||| | || ||||| || |
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| T |
47798355 |
tatgcatctgctaactaattttgctttctttgcaattggaagaagagtttctgatgtatgtaagatggatattgcccctgacatgctcttgagtgcaact |
47798454 |
T |
|
| Q |
102 |
tcattcaaatatgcatcagttcttgccaccaagttcccaactgaataatcttctgtcatctcaagatattcggccacacatcgaagcatagcgatgtttt |
201 |
Q |
| |
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|||||||| || | ||| |||||| | |||| || | | ||||||||||||||||| |||||||||| |||||||||||||||||||| |||| ||| |
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| T |
47798455 |
tcattcaagtaagaatcggttcttcctaccatatttctgtccgaataatcttctgtcatttcaagatatttggccacacatcgaagcatagtgatgcttt |
47798554 |
T |
|
| Q |
202 |
c |
202 |
Q |
| |
|
| |
|
|
| T |
47798555 |
c |
47798555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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