View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4038_low_49 (Length: 236)
Name: NF4038_low_49
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_49 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 26690305 - 26690084
Alignment:
| Q |
1 |
ttttgagtggtgatgttaacacttgtgagtatttcttgattctctttccttagcttagaaacttgtgacacaagatcatccaagtgcttctgtttcctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690305 |
ttttgagtggtgatgttaacacttgtgagtatttcttgattctctttccttagcttagaaacttgtgacacaagatcatccaagtgcttctgtttcctca |
26690206 |
T |
|
| Q |
101 |
tcctagaccgccttgccgattcgcgattcgatatcatcctcttcctctttctttgatccatcaaagcctgtaaatcttcttctgaacctgagttttgtag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26690205 |
tcctagaccgccttgccgattcgcgattcgatatcatcctcttcctctttctttgatccatcaaagcctgtaaatcttcttctgaacctgagttttgtag |
26690106 |
T |
|
| Q |
201 |
tagagatgaacctgaagatgtt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
26690105 |
tagagatgaacctgaagatgtt |
26690084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 191
Target Start/End: Complemental strand, 54791346 - 54791226
Alignment:
| Q |
71 |
caagatcatccaagtgcttctgtttcctcatcctagaccgccttgccgattcgcgattcgatatcatcctcttcctctttctttgatccatca-aagcct |
169 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| | ||| | ||||| |||||||| ||||||||||| ||||| || |||||||||||||||| |||| | |
|
|
| T |
54791346 |
caagatcatctaagtgcttttgtttcctcattcgagatcttcttgctgattcgcggttcgatatcattctctttctttttctttgatccatcagaagcat |
54791247 |
T |
|
| Q |
170 |
gtaaatcttcttctgaacctga |
191 |
Q |
| |
|
|||||||| ||||||||||| |
|
|
| T |
54791246 |
-caaatcttcctctgaacctga |
54791226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 7235502 - 7235416
Alignment:
| Q |
75 |
atcatccaagtgcttctgtttcctcatcctagaccgccttgccgattcgcgattcgatatcatcctcttcctctttctttgatccat |
161 |
Q |
| |
|
|||||||| ||||||||| ||||||||||| || | |||||||||||||| |||||| | | |||||||| |||||||||||||| |
|
|
| T |
7235502 |
atcatccatgtgcttctgcttcctcatccttgatcttcttgccgattcgcggttcgattgctttctcttcctttttctttgatccat |
7235416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University