View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4038_low_50 (Length: 236)
Name: NF4038_low_50
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_50 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 230
Target Start/End: Original strand, 44879113 - 44879327
Alignment:
| Q |
16 |
agttatgtaccaatttttggatcaagcttgtatctagtttcaagaaaaatctactatttaatagcaatagtagattgtgttcctgttgtttgatacacga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
44879113 |
agttatgtaccaatttttggatcaagcttgtatctagtttcaagaaaaatctactatttaatagtaatagtaaattgtgttcctgttgtttgatacacga |
44879212 |
T |
|
| Q |
116 |
ttcaccaattcaaatggtacatacattggttgttgctcatcatatggttcattcccgataaaatagtttgatgtcgatgtcattcatagaagtagcatac |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44879213 |
ttcaccaattcaaatggtacatacattggttgttgctcatcatatggttcattcccggtaagatagtttgatgtcgatgtcattcatagaagtaacatac |
44879312 |
T |
|
| Q |
216 |
ggtaaatagaattat |
230 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
44879313 |
ggtaaatagaattat |
44879327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 227
Target Start/End: Complemental strand, 29677930 - 29677771
Alignment:
| Q |
69 |
ctatttaatagcaatagtagattgtgttcctgttgtttgatacacgattcaccaattcaaatggtacatacattggttgttgctcatcatatggttcatt |
168 |
Q |
| |
|
||||| |||| |||||||| |||||| || |||||||| | ||||||||||| ||||| |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
29677930 |
ctattaaataacaatagtatattgtgcaactattgtttgacatacgattcaccagttcaagcggtacataacttggttgttcctcatcatatggttcatt |
29677831 |
T |
|
| Q |
169 |
cccgataaaatagtttgatgtcgatgtcattcatagaagtagcatacgg-taaatagaat |
227 |
Q |
| |
|
||| |||| || |||| ||||||||| ||||||||||| ||| ||| || |||||||||| |
|
|
| T |
29677830 |
ccctataagattgtttaatgtcgatgccattcatagaattagtatatggttaaatagaat |
29677771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 226
Target Start/End: Complemental strand, 26459137 - 26458983
Alignment:
| Q |
75 |
aatagcaatagtagattgtgttcctgttgtttgatacacgattcaccaattcaaatggtacatacattggttgttgctcatcatatggttcattcccgat |
174 |
Q |
| |
|
|||| |||||||| |||||||| || ||||||| | ||||||||||||||||| ||||| || ||||||| | ||| ||||||||||||||||| | |
|
|
| T |
26459137 |
aataacaatagtatattgtgttactattgtttggcatacgattcaccaattcaagcggtacgtaacttggttgatcctcgtcatatggttcattccctgt |
26459038 |
T |
|
| Q |
175 |
aaaa--tagtttgatgtcgatgtcattcatagaagtagcatacgg-taaatagaa |
226 |
Q |
| |
|
|| | | |||||||||||||| ||||||||||| ||| ||| || ||||||||| |
|
|
| T |
26459037 |
aagattttgtttgatgtcgatgccattcatagaattagtatatggttaaatagaa |
26458983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 171
Target Start/End: Original strand, 11491478 - 11491580
Alignment:
| Q |
69 |
ctatttaatagcaatagtagattgtgttcctgttgtttgatacacgattcaccaattcaaatggtacatacattggttgttgctcatcatatggttcatt |
168 |
Q |
| |
|
||||| |||| ||||||||||||||| | || ||||| || | ||||||||||||||||||||||||| ||||||||| || |||||||||||| |
|
|
| T |
11491478 |
ctattaaataacaatagtagattgtgctactattgttcgacatgtgattcaccaattcaaatggtacataacttggttgttcttcggaatatggttcatt |
11491577 |
T |
|
| Q |
169 |
ccc |
171 |
Q |
| |
|
||| |
|
|
| T |
11491578 |
ccc |
11491580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University