View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_51 (Length: 236)
Name: NF4038_low_51
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 54929122 - 54928889
Alignment:
| Q |
1 |
tttttgatctcagatgaaatattgtcttagaaaaatgtatatcatagaataaagaccaataaatcttatcgacctattttgccaacccgtacatttgatt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||| ||||| ||||||| |
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| T |
54929122 |
tttttgatctcagatgaaatattatcttagaaaaatatatatcatagaataaagatcaataaatcttatcgatctattttgtcaactcgtacgtttgatt |
54929023 |
T |
|
| Q |
101 |
gtaatacaaaggaataaatgtacaaagt-nnnnnnnnnnnnnttagatgttaaataaaaagtagaatacaattgtattaacattaacataattcaaaatt |
199 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54929022 |
gtaatacaaacaaataaatgtacaaagtaaaaaaagaaaaaattagatgttaaataaaaagtagaatacaattgtattaacattaacataattcaaaatt |
54928923 |
T |
|
| Q |
200 |
agaaattcctgttattacagctggaacgcctatg |
233 |
Q |
| |
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||||||||| || |||||||||| ||| |||||| |
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| T |
54928922 |
agaaattccagtcattacagctgaaacacctatg |
54928889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 50466475 - 50466364
Alignment:
| Q |
7 |
atctcagatgaaatattgtcttagaaaaatgtatatcatagaataaagaccaataaatcttatcgacctattttgccaacccgtacatttgattgtaata |
106 |
Q |
| |
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|||||| |||||||||| || |||||||||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||| || ||||||||||||| |
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| T |
50466475 |
atctcaaatgaaatattatcgtagaaaaatgtatatcatagaatatagaccaataggtcttatcaacctatttttccaacccatatgtttgattgtaata |
50466376 |
T |
|
| Q |
107 |
caaaggaataaa |
118 |
Q |
| |
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||||||||||| |
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| T |
50466375 |
taaaggaataaa |
50466364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 50466336 - 50466289
Alignment:
| Q |
142 |
ttagatgttaaataaaaagtagaatacaattgtattaacattaacata |
189 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
50466336 |
ttagatgttaaataaatagtagaatacaattgtattaacattaacata |
50466289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 13061779 - 13061896
Alignment:
| Q |
1 |
tttttgatctcagatgaaatattgtcttagaaaaatgtatatcatagaataaagaccaataaatcttatcgacctattttgccaacccgtacatttgatt |
100 |
Q |
| |
|
||||||||||||||| |||||| || |||||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||| | |||||| |
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|
| T |
13061779 |
tttttgatctcagataaaatataatcgtagaaaaatgtatatcatagaataaagatcaataagtcttaccgacctattttgccaacccatgtgattgatt |
13061878 |
T |
|
| Q |
101 |
gtaatacaaaggaataaa |
118 |
Q |
| |
|
|||||| ||||||||||| |
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|
| T |
13061879 |
gtaatataaaggaataaa |
13061896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 189
Target Start/End: Original strand, 13061921 - 13061968
Alignment:
| Q |
142 |
ttagatgttaaataaaaagtagaatacaattgtattaacattaacata |
189 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
13061921 |
ttagatgttaaataaaaagtggaatacaattgtattaacattaacata |
13061968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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