View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4038_low_58 (Length: 212)
Name: NF4038_low_58
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_58 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 14 - 197
Target Start/End: Complemental strand, 46428109 - 46427926
Alignment:
| Q |
14 |
taattcttgtttcttggcaacttcgttcttgtttcttgcacgacaaacatcacgaaactttctctttgtgcttcttactttctgcctcttagcaacttca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428109 |
taattcttgtttcttggcaacttcgttcttgtttcttgcacgacgaacatcacgaaactttctctttgtgcttcttactttctgcctcttagcaacttca |
46428010 |
T |
|
| Q |
114 |
cttttgcttgtatttaaacaatgctctttagccaattctgtttaatgttttgatcaaataaaaatgaaagattgatgtaatttt |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46428009 |
cttttgcttgtatttaaacaatgctctttagcaaattctgtttaatgttttgatcaaataaaaatgaaagattgatgtaatttt |
46427926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 46027753 - 46027585
Alignment:
| Q |
14 |
taattcttgtttcttggcaacttcgttcttgtttcttgcacgacaaacat------cacgaaactttctctttgtgcttcttactttctgcctcttagca |
107 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||| || ||||| |
|
|
| T |
46027753 |
taattcttgtttcttagcaacttcgttcttgtttcttgcacgacgaacatacaccacacgaaactttctctttgtgcttcttactttttgcttcatagca |
46027654 |
T |
|
| Q |
108 |
acttcacttttgcttgtatttaaacaatgctctttagccaattctgtttaatgttttgatcaaataaaa |
176 |
Q |
| |
|
|||||| ||||| ||||| |||||||| |||| | ||| |||||||||||||||||||||||||||||| |
|
|
| T |
46027653 |
acttcatttttgtttgtaattaaacaacgctcctcagcaaattctgtttaatgttttgatcaaataaaa |
46027585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 46015789 - 46015635
Alignment:
| Q |
29 |
ggcaacttcgttcttgtttcttgcacgacaaacatc------acgaaactttctctttgtgcttcttactttctgcctcttagcaacttcacttttgctt |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| ||||||||||||| | ||| ||||||||| || |||||||||||||| ||||| || |
|
|
| T |
46015789 |
ggcaacttcgttcttgtttcttgcacgacgaacattctccagacgaaactttctccctatgcgtcttactttttgtttcttagcaacttcatttttgttt |
46015690 |
T |
|
| Q |
123 |
gtatttaaacaatgctctttagccaattctgtttaatgttttgatcaaataaaaa |
177 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46015689 |
gtatttaaacaatgctccttagcaaattctgtttaatgttttgatcaaataaaaa |
46015635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 174
Target Start/End: Original strand, 3801912 - 3802015
Alignment:
| Q |
71 |
ctttctctttgtgcttcttactttctgcctcttagcaacttcacttttgcttgtatttaaacaatgctctttagccaattctgtttaatgttttgatcaa |
170 |
Q |
| |
|
||||||||||||||| | |||||| ||| |||||| ||| ||| |||| | | ||| | | |||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
3801912 |
ctttctctttgtgctccctactttttgcttcttaggaacatcattttttatgttttttgagcgatgctctttagcaaattctgattaatgttttgatcaa |
3802011 |
T |
|
| Q |
171 |
ataa |
174 |
Q |
| |
|
|||| |
|
|
| T |
3802012 |
ataa |
3802015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University