View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4038_low_6 (Length: 504)
Name: NF4038_low_6
Description: NF4038
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4038_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 19 - 493
Target Start/End: Original strand, 39402912 - 39403387
Alignment:
| Q |
19 |
ctccaaaagcgtgacctgtttttgggtctattcatggaggtaatgtcaataatactacc--------cactttctatgctcatgcttcatcattcaggtg |
110 |
Q |
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| T |
39402912 |
ctccaaaagcgtgacctgtttttgggtctattcatggaggtaatgtcaataatactaccaaaatacccactttctatgctcatgcttcattattcgggtg |
39403011 |
T |
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| Q |
111 |
cacaatttggttgtttggatattagttttaaagatagtaatttgtctcaaacttatggactaaaatacaacacacaaaatttgtaatttgattcaattga |
210 |
Q |
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| T |
39403012 |
cacaatttggttgtttggatattagttttaaagatagtaatttgtctgaaacttatggactaaaatacaacacacaaaatttgtaatttgattcaattga |
39403111 |
T |
|
| Q |
211 |
agaattttatttagcttcttttagatgaaaaaatctccttgacctatcatggtggacctacttactaaaaataagtttgtgtgaaagaagagagtc-ttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39403112 |
agaattttatttagcttcttttagatgaaaaaatctccttgacctatcatggtggacctacttactaaaaataagtttgtgtgaaagaagagagtctttt |
39403211 |
T |
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| Q |
310 |
ttatctgtttccatatttgtgaactgtgagtctgtgaccacatgaaaattggaccactaatgtctaatgggatatctcaaaatactattcatttgtacat |
409 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39403212 |
ttatctgtttccatatttgtgaa--------ttgtgaccacatgaaaattggaccactaatgtctaatgggatatctcaaaatactattcatttgtacat |
39403303 |
T |
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| Q |
410 |
acaatcatgatgcaaaaatgtgattattctccgcaccgtcccacatctggcgatgtcaacattcatcaccaatttacgattcat |
493 |
Q |
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| T |
39403304 |
acaatcatgatgcaaaaatgtgattattctctgcaccgtcccacatctggcgatgtcaacattcatcaccaatttacgattcat |
39403387 |
T |
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