View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4039_high_2 (Length: 281)
Name: NF4039_high_2
Description: NF4039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4039_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 117 - 265
Target Start/End: Complemental strand, 22462644 - 22462496
Alignment:
| Q |
117 |
ttggtgggtgacatgccatggttcactagaacaaagaagcaaatgatgaagccaaatcaggccactctatcttttatcaaagtacctcatgttgtaccta |
216 |
Q |
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| T |
22462644 |
ttggtgggtgacatgccatggttcactagaaaaaaggagcaaatgatgaagccaaatcaagccactctatcttttatcaaagtacctcatgttgtaccta |
22462545 |
T |
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| Q |
217 |
tgcgttggtaatattgatttgaatgcaaacaacgatcgcaacttcaaat |
265 |
Q |
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| T |
22462544 |
tgcgttggtaatattgatttgaatgcaaacaacgatcgcaacttcaaat |
22462496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 22462760 - 22462685
Alignment:
| Q |
1 |
ttctgctaaaactctgccgtttgactaagactcaagaaagctaatgaaaccaaaacccaaacgacagaaggctaat |
76 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22462760 |
ttctgctcaaactctgccgtttgactaagactcaagaaagctaatgaaaccaaaacctaaacgacagaaggctaat |
22462685 |
T |
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