View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4039_high_5 (Length: 247)
Name: NF4039_high_5
Description: NF4039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4039_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 14392278 - 14392517
Alignment:
| Q |
1 |
ttgggttagagattaataagatgatgtttttatattgctgagtcaaacttgccaaatcacacccttaatgtgcaaataattttttcacggtttgtccaaa |
100 |
Q |
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| T |
14392278 |
ttgggttagagattaataagatgatgtttttatattgttgagtcaaacttgccaaatcacacccttaatgtgcaaatagttttttcacggtttgtccaaa |
14392377 |
T |
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| Q |
101 |
tannnnnnncaacatggacggaggtagtaatttaaattttgagtctggccaaatctaaaattataggatcaaatttatatcttttatctttaccaagatt |
200 |
Q |
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| T |
14392378 |
tatatttttcaacatggacggaggtagtaatttaaattttgagtttggccaaatctaaaattataggatcaaatttatatcttttatctttaccatgatt |
14392477 |
T |
|
| Q |
201 |
attcctctgccaaatgccaacaactcaagacgtacctatg |
240 |
Q |
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|||||| | |||||||||||||||||||||||||||||| |
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| T |
14392478 |
gttcctccgtcaaatgccaacaactcaagacgtacctatg |
14392517 |
T |
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