View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4039_low_1 (Length: 372)
Name: NF4039_low_1
Description: NF4039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4039_low_1 |
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| [»] scaffold0224 (2 HSPs) |
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Alignment Details
Target: scaffold0224 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 41 - 207
Target Start/End: Complemental strand, 327 - 161
Alignment:
| Q |
41 |
ttaatactgataatattaaatctgatgatgatccccatgtatggacatggaatatgcttggctcctcatacgccatccacaaaggtcattgatttttcaa |
140 |
Q |
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| T |
327 |
ttaatactgataatattaaatctgatgatgatccccatgtatggacatggaatatgcttggctcctcatacgccatccacaaaggtcattgatttttcaa |
228 |
T |
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| Q |
141 |
tgagcttcatatatggcatacagggagccaggcacatactcatatttatgcatgatgatgatgctac |
207 |
Q |
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| T |
227 |
tgagcttcatatatggcatacagggagccaggcacatactcatatttacgcatgatgatgatgctac |
161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 281 - 359
Target Start/End: Complemental strand, 108 - 30
Alignment:
| Q |
281 |
aacctaaggctatagaatttgtgtttgtgcaaatcaagaaagcannnnnnngcttataagaaaaaaggaagtttaaatt |
359 |
Q |
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| T |
108 |
aacctaaggctatagaatttgtgtttgtgcaaatcaagaaagcatttttttgcttataagaaaaaaggaagtttgaatt |
30 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 41 - 207
Target Start/End: Original strand, 42904559 - 42904725
Alignment:
| Q |
41 |
ttaatactgataatattaaatctgatgatgatccccatgtatggacatggaatatgcttggctcctcatacgccatccacaaaggtcattgatttttcaa |
140 |
Q |
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| T |
42904559 |
ttaatactgataatattaaatctgatgatgatccccatgtatggacatggaatatgcttggctcctcatacgccatccacaaaggtcattgatttttcaa |
42904658 |
T |
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| Q |
141 |
tgagcttcatatatggcatacagggagccaggcacatactcatatttatgcatgatgatgatgctac |
207 |
Q |
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| T |
42904659 |
tgagcttcatatatggcatacagggagccaggcacatactcatatttacgcatgatgatgatgctac |
42904725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 281 - 359
Target Start/End: Original strand, 42904778 - 42904856
Alignment:
| Q |
281 |
aacctaaggctatagaatttgtgtttgtgcaaatcaagaaagcannnnnnngcttataagaaaaaaggaagtttaaatt |
359 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
42904778 |
aacctaaggctatagaatttgtgtttgtgcaaatcaagaaagcatttttttgcttataagaaaaaaggaagtttgaatt |
42904856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 43295340 - 43295411
Alignment:
| Q |
133 |
tttttcaatgagcttcatatatggcatacagggagccaggcacatactcatatttatgcatgatgatgatgc |
204 |
Q |
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|||||| ||||| ||| |||||| |||||||||||||| ||||||||||||| |||||||||| ||||||| |
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| T |
43295340 |
tttttctatgagattcgtatatgacatacagggagccaaacacatactcatatgtatgcatgattatgatgc |
43295411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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