View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4039_low_3 (Length: 277)
Name: NF4039_low_3
Description: NF4039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4039_low_3 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 4961982 - 4962244
Alignment:
| Q |
1 |
aataaaagatataaaattaaattaacaaaaatgatcaggtcaatttgattcctttctttgcattgttggtaagtacaaattatgaatacaatttgaacta |
100 |
Q |
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| T |
4961982 |
aataaaagatataaaattaaattaacaaaaatgatcaggtcaatttgattcatttctttgcattgttggtaagtacaaattatgaatacaatttgaacta |
4962081 |
T |
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| Q |
101 |
attactttaagatatttgatcaaaatagctatgtcaatatcttggtcactagtccctaatttcttaggtgaacgcatgtccattgaaagtttaagaacgc |
200 |
Q |
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| T |
4962082 |
attactttaagatatttgatcaaaatagctatgtcaatatcttggtcactagtccctaatttcttaggtgaacgcatgtccattgaaagtttaagaacgc |
4962181 |
T |
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| Q |
201 |
gaaattaagtaaactaatattcctgttatgataggcaataactggacaatatatactaattct |
263 |
Q |
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| T |
4962182 |
gaaattaagtaaactaatattcctgttatgataggcaataactggacaatatatactaattct |
4962244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 14108 - 14188
Alignment:
| Q |
27 |
aaaaatgatcaggtcaatttgattcctttctttgcattgtt-ggtaagtacaaattatgaatacaatttgaactaattact |
106 |
Q |
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| T |
14108 |
aaaaatgattaagtcaatttgattcccttctctgaattgtttggtaactaaatactatgaatacaatttggactaattact |
14188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 35948126 - 35948171
Alignment:
| Q |
106 |
tttaagatatttgatcaaaatagctatgtcaatatcttggtcacta |
151 |
Q |
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| T |
35948126 |
tttaagatatttgatcaaaatagttaagccaatgtcttggtcacta |
35948171 |
T |
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