View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4039_low_6 (Length: 220)
Name: NF4039_low_6
Description: NF4039
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4039_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 14392050 - 14391848
Alignment:
| Q |
1 |
gacttaaggatgtaactaagaatcatcagtaatgaaaatctaaaatcattacttcaagaaactcagcttcctcagcaacacaaaagtgacaaaatttaag |
100 |
Q |
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| T |
14392050 |
gacttaagggtgtaactaagaatcattagtaatgaaaatctaaaatcattacttcaagaaactcaacttcctcagcaacacaacagtgacaaaatttaag |
14391951 |
T |
|
| Q |
101 |
attcaaatcctcattgccctctatgtgactcatgtcattgatgaagagggagttgttgtttattttttacttaatccatctcttcaatcctcaacaaccc |
200 |
Q |
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| T |
14391950 |
attcaaaacctcatttccctctatgtgactcatgtcattgatgaagagggagttattgtttatttttgacttaatccatctcttcaatcctcgacaaccc |
14391851 |
T |
|
| Q |
201 |
tat |
203 |
Q |
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||| |
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| T |
14391850 |
tat |
14391848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 174
Target Start/End: Complemental strand, 14392078 - 14392044
Alignment:
| Q |
140 |
gatgaagagggagttgttgtttattttttacttaa |
174 |
Q |
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| T |
14392078 |
gatgaagagggagttgttgtttatttttgacttaa |
14392044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 40 - 191
Target Start/End: Complemental strand, 7821396 - 7821243
Alignment:
| Q |
40 |
ctaaaatcattacttcaagaaactcagcttcctcagcaacacaaaagtgacaaaatttaa--gattcaaatcctcattgccctctatgtgactcatgtca |
137 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |||| |||||||||||| |||||||||| |||||||| |
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| T |
7821396 |
ctaaaatcattacttcaagaaactcaacttcctcatcaacacaaaagtgacaaaacttaaaagatttaaatcctcattgtcctctatgtgtatcatgtca |
7821297 |
T |
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| Q |
138 |
ttgatgaagagggagttgttgtttattttttacttaatccatctcttcaatcct |
191 |
Q |
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| T |
7821296 |
ttcatgaagagggtgttgttgtttattttttactcaatccatctcatcaatcct |
7821243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 30596840 - 30596880
Alignment:
| Q |
40 |
ctaaaatcattacttcaagaaactcagcttcctcagcaaca |
80 |
Q |
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|||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
30596840 |
ctaaaatcattacttcaataaacccagcttcctcatcaaca |
30596880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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