View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4040_high_1_N (Length: 437)
Name: NF4040_high_1_N
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_high_1_N |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 15 - 437
Target Start/End: Complemental strand, 53045332 - 53044910
Alignment:
| Q |
15 |
aacctgtggagttatggtataacacttgtcaacaacataaacaattaagcaaaagaaaatgttggaaatgaagtctattattaaaatcacaatcaatcca |
114 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
53045332 |
aacctgagaagttatggtataacacttgtcaacaacataaacaattaagcaaaagaaaatgttggaaatgaagtctattattaaaatcacaatcaattca |
53045233 |
T |
|
| Q |
115 |
tccaagtaaggataagtacagaacatgtcttttgaaatttctcaagagattttgaatccttaaatccttatgttgtagaatgtgagaaacttaattggaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53045232 |
tccaagtaaggataagtacagaacatgtcttttgaaatttctcaagagattttgaatccttaaatccttatgttgtagaatgtgagaaaattaattggaa |
53045133 |
T |
|
| Q |
215 |
taccaagccaaaaggacgctactcagaatatctttttcaatccttaaataaggttatatacctatcactagtaggagaaataaatcattttacagttgac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53045132 |
taccaagccaaaaggacgctactcagaatagctttttcaatccttaaatgaggttatatacctatcactagtaggagaaataaatcattttacagttgac |
53045033 |
T |
|
| Q |
315 |
tggctcctaacttgatcgctagaaaaaatctctaacatagtcttattatggcccctttagtttccattgatttagttttggactgtaaaggacaatacct |
414 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53045032 |
tggctcctaacttaatcgctagaaaaaatctctaacatagtcttattatggcccctttagtttccattgatttagttttggactgtaaaggacaatacct |
53044933 |
T |
|
| Q |
415 |
taccaactggaaactataggaac |
437 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
53044932 |
taccaactggaaactataggaac |
53044910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University