View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4040_high_3_N (Length: 342)
Name: NF4040_high_3_N
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_high_3_N |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 46873096 - 46873354
Alignment:
| Q |
18 |
ctgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggggcacttatcggaaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46873096 |
ctgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggggcacttatcggaaga |
46873195 |
T |
|
| Q |
118 |
ctaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaataactcattttgatt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46873196 |
ctaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaataactcattttgatt |
46873295 |
T |
|
| Q |
218 |
attggttttggttttatcatataattctactgttttatattgttcaatcatataaaata |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46873296 |
attggttttggttttatcatataattctactgttttatattgttcaatcatataaaata |
46873354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 103 - 276
Target Start/End: Original strand, 46890593 - 46890766
Alignment:
| Q |
103 |
gcacttatcggaagactaagctgtgtctcaagtggaaggatacgggatattgttcctttggaaagaattgtcactttgctcatggtgaagaaggtaacaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
46890593 |
gcacttatcggaagactaagctgtgtcgcaattggaagcatacaggatattgttcctttggaatgaactgtctctttgctcatggtgaagaaggtaacaa |
46890692 |
T |
|
| Q |
203 |
taactcattttgattattggttttggttttatcatataattctactgttttatattgttcaatcatataaaata |
276 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| || ||||| ||||| ||| |||||||||| |
|
|
| T |
46890693 |
taactcattttgcttattggttttggttttatcatataattctattgctttattttgtttaattatataaaata |
46890766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 46890418 - 46890502
Alignment:
| Q |
18 |
ctgtgcaagaagtattgcaatggggagaaatgtccctatggagataagtgtaaattccttcatgaagatcctgcacaatttaggg |
102 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
46890418 |
ctgtgcaagaattattgcaatggggaggaatgtccatatggagataactgtatattccttcatgaagatcctgcacagtttaggg |
46890502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University