View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4040_high_6 (Length: 318)
Name: NF4040_high_6
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_high_6 |
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| [»] scaffold0440 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 15 - 303
Target Start/End: Complemental strand, 8327 - 8037
Alignment:
| Q |
15 |
ggtctgtagccagttattatttgaattcaccatatgtaagtgtttcaactttaaacctgttctttctaacttaatataggttcaaatccaatacaaataa |
114 |
Q |
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| T |
8327 |
ggtctgtagccagttattatttgaattcaccatatgtaagtgtttcaactttaaacctgttctttctaacttaatataggttcaaatccaatacaaataa |
8228 |
T |
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| Q |
115 |
taatttagataagctacacaaccaccatataaatatacagatacaca--cacattgatgaaatgcattatttatgaggttaagttgatactttcctggaa |
212 |
Q |
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| T |
8227 |
taatttagataagctacacaaccaccatataaatatacagatacacacacacattgatggaatgcattatttatgaggttaagttgatactttcctggaa |
8128 |
T |
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| Q |
213 |
gtcaatatcacgtacagttggttatgttctgttaaaatcacctgccgagcaatatgcttcgcctatcgaatctacctagattagagaaaag |
303 |
Q |
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| T |
8127 |
gtcaatatcacgtacagttggttatgttctgttaaaatcacctgccgagcaatatgcttcgcctatcgaatctacctagattagagaaaag |
8037 |
T |
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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 63484 - 63520
Alignment:
| Q |
71 |
ctgttctttctaacttaatataggttcaaatccaata |
107 |
Q |
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| T |
63484 |
ctgttctttctaactagatataggttcaaatccaata |
63520 |
T |
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