View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4040_low_1 (Length: 608)
Name: NF4040_low_1
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 10 - 592
Target Start/End: Complemental strand, 206385 - 205790
Alignment:
| Q |
10 |
aaaaatatccaatatcaaccaatttgatggtataatgaacatcataatcttttatattatttcannnnnnncaattatttaaacaattcaactatatttc |
109 |
Q |
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| T |
206385 |
aaaaatatccaatatcaaccaatttgatggtataatgaacctcataatattttatattatttcatatttttcaattatttaaacaattcaactatatttc |
206286 |
T |
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| Q |
110 |
ttttaaatat-------agtta-cgaa-----ttaaatagaccccactctataacactcgtctaaaactcttaaggataatgtttattgttacgaatgag |
196 |
Q |
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| T |
206285 |
ttttaaatatctataacacttagctaaaactcttaaatagaccacagtctgtaacactcgtctaaaactcttaatgataatgtttattgttatgaatgag |
206186 |
T |
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| Q |
197 |
agagaaaaatgaat-ataaaaatcaatcaaggtccgctgattttaactctttatccaccctaattttcatcaaagacaaagatcgtagttttaaattctt |
295 |
Q |
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| T |
206185 |
agaaaaaaacgaaacataagaatcaatcaaggtccactgattttaactctttatccatcctgattttcgtcaaagacaaagatcgtaattttaaattttt |
206086 |
T |
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| Q |
296 |
tagatcagtccacgtgcacattcttgcctttcgtttcaaaattccttcgatataatttagaagtatttaactcttaaatggatcccaaaatcttccaata |
395 |
Q |
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| T |
206085 |
tagatcagttcacgtgcacattcttgcctttcgtttcaaaatttcttcg-tataatttagaagtatttaactcttaaatggatcccaaaatcttccaata |
205987 |
T |
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| Q |
396 |
tatttcacatttatagtttaagatcatattctaatcttaagttattttttacacccaaaaaagtagaaaagaaacgttgtcgtacatagccacaatgcta |
495 |
Q |
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| T |
205986 |
tatttcacatttatagtttaagatcatattctaatcttaagttattttttacacccaaaaaagtagaaaagaaacgttttcgtacatagccacaatgcta |
205887 |
T |
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| Q |
496 |
ggttggactcctatgcttataagtgaaatagtggtaacactgcaacatagtggtgtagttatttgtaaagacactctgaaaaaataccgatattgat |
592 |
Q |
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| T |
205886 |
ggttcgactactatgcttataagtgaaatagtggtaacactgcaacatagtggtgtagttatttgtaaagacactctgaaaaacaaccgatattgat |
205790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 281 - 343
Target Start/End: Original strand, 3632383 - 3632444
Alignment:
| Q |
281 |
tagttttaaattctttagatcagtccacgtgcacattcttgcctttcgtttcaaaattccttc |
343 |
Q |
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| T |
3632383 |
tagttttaaattctttaaatcagtccacgtgcacattcttgcctttcg-ttcaaaattccttc |
3632444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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