View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4040_low_11 (Length: 227)
Name: NF4040_low_11
Description: NF4040
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4040_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 8032662 - 8032878
Alignment:
| Q |
1 |
atatatttttgtttgtttcagaaaacactataacacaggtccagtagatttgtttttcaatggaaagcctactcctgctaagggtcttcaaattatcttt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8032662 |
atatttttttgtttgtttcagaaaacactataacacaggtccagtagatttgtttttcaatggaaagcctactcctgctaagggtcttcaaattatcttt |
8032761 |
T |
|
| Q |
101 |
gatagtgggagctcctacacttacttcaatcccgcagtctataccattgttgcaaatatggttagacaaaaactaagaaacaatgctatcaattttattt |
200 |
Q |
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|||||||||||||||||||||||||||| | || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8032762 |
gatagtgggagctcctacacttacttcagttccccagtctataccattgttgctaatatggttagacaaaaactaagaaacaatgctatcaattttattt |
8032861 |
T |
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| Q |
201 |
tcttattttgccctatg |
217 |
Q |
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||||||||||||||||| |
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| T |
8032862 |
tcttattttgccctatg |
8032878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 12 - 217
Target Start/End: Original strand, 8022661 - 8022868
Alignment:
| Q |
12 |
tttgtttcagaaaacactataacacaggtccagtagatttgtttttcaatggaaagcctactcctgctaagggtcttcaaattatctttgatagtgggag |
111 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8022661 |
tttgtttcagaaaacactatagcacaggtccagtagatttgtttttcaatggaaagcctactcctgctaagggtcttcaaattatctttgatagtgggag |
8022760 |
T |
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| Q |
112 |
ctcctacacttacttcaatcccgcagtctataccattgttgcaaatatggttagac--aaaaactaagaaacaatgctatcaattttattttcttatttt |
209 |
Q |
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||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||| ||||| ||||||| |
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| T |
8022761 |
ctcctacacttacttcagtccccgagtctataccattgttgctaatatggttagacaaaaaaattaagaaacaatgctatcaatttcatttttttatttt |
8022860 |
T |
|
| Q |
210 |
gccctatg |
217 |
Q |
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|||||||| |
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| T |
8022861 |
gccctatg |
8022868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 10329445 - 10329369
Alignment:
| Q |
54 |
ttttcaatggaaagcctactcctgctaagggtcttcaaattatctttgatagtgggagctcctacacttacttcaat |
130 |
Q |
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|||||||||||||||||||| || |||||||||| | |||| || |||||||| ||||| ||||| ||||||||| |
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| T |
10329445 |
ttttcaatggaaagcctactactattaagggtcttgaccttattttcgatagtggaagctcttacacatacttcaat |
10329369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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